Wall clock time and date at job start Sun Mar 29 2020 22:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 119.55561 * 2 1 4 4 C 1.38540 * 119.21945 * 180.02562 * 3 2 1 5 5 C 1.39136 * 118.37540 * 359.97438 * 4 3 2 6 6 O 1.35911 * 120.47619 * 180.02562 * 5 4 3 7 7 C 1.38706 * 119.05309 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.65897 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.47107 * 90.00047 * 8 7 5 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.46818 * 35.00369 * 10 9 8 12 12 C 1.52993 * 109.47308 * 275.00154 * 10 9 8 13 13 C 1.50695 * 109.46760 * 155.00092 * 10 9 8 14 14 H 1.08002 * 120.00262 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99815 * 180.02562 * 13 10 9 16 16 N 1.31517 * 119.99938 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99914 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.47096 * 90.00181 * 17 15 13 19 19 H 1.48503 * 109.46922 * 209.99323 * 17 15 13 20 20 H 1.48497 * 109.47548 * 329.99869 * 17 15 13 21 21 N 1.31842 * 120.68589 * 0.25927 * 7 5 4 22 22 H 1.08996 * 109.47334 * 90.00317 * 1 2 3 23 23 H 1.08999 * 109.47247 * 210.00185 * 1 2 3 24 24 H 1.08998 * 109.47179 * 330.00027 * 1 2 3 25 25 H 1.07995 * 120.39298 * 359.97438 * 3 2 1 26 26 H 1.07999 * 120.81169 * 179.97438 * 4 3 2 27 27 H 0.96701 * 113.99999 * 269.97911 * 6 5 4 28 28 H 1.09002 * 109.47152 * 330.00134 * 8 7 5 29 29 H 1.09001 * 109.46980 * 210.00235 * 8 7 5 30 30 H 1.00908 * 110.99847 * 56.05051 * 9 8 7 31 31 H 1.09004 * 109.47538 * 300.00000 * 12 10 9 32 32 H 1.09001 * 109.46997 * 59.99957 * 12 10 9 33 33 H 1.08999 * 109.47404 * 180.02562 * 12 10 9 34 34 H 0.97001 * 120.00067 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.2026 0.0000 4 6 3.5743 1.1945 -0.0005 5 6 4.2284 -0.0335 -0.0005 6 8 5.5862 -0.0913 -0.0005 7 6 3.4748 -1.1980 0.0006 8 6 4.1691 -2.5356 0.0000 9 7 4.3963 -2.9699 1.3848 10 6 5.0724 -4.2736 1.4235 11 1 5.7721 -4.3448 0.5909 12 6 4.0328 -5.3907 1.3130 13 6 5.8224 -4.4120 2.7232 14 1 5.7988 -3.6119 3.4482 15 6 6.5387 -5.5603 2.9868 16 7 6.5669 -6.5349 2.1042 17 14 7.4678 -5.7322 4.5982 18 1 6.5810 -6.3486 5.6176 19 1 8.6596 -6.5941 4.3929 20 1 7.9014 -4.3910 5.0653 21 7 2.1574 -1.1469 -0.0035 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6481 2.1374 -0.0004 26 1 4.1329 2.1188 -0.0010 27 1 5.9792 -0.1084 -0.8839 28 1 5.1258 -2.4481 -0.5149 29 1 3.5460 -3.2682 -0.5130 30 1 3.5303 -2.9966 1.9021 31 1 3.3330 -5.3195 2.1457 32 1 3.4903 -5.2905 0.3729 33 1 4.5344 -6.3580 1.3422 34 1 7.0706 -7.3429 2.2898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134974247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:07 Heat of formation + Delta-G solvation = -12.084351 kcal Electronic energy + Delta-G solvation = -16365.738580 eV Core-core repulsion = 13684.616262 eV Total energy + Delta-G solvation = -2681.122318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44256 -37.18084 -35.99505 -33.18469 -31.90272 -31.70947 -28.87818 -26.79633 -25.17008 -24.70289 -22.33242 -21.34675 -20.12664 -18.31717 -16.79153 -16.42326 -15.57734 -15.16240 -14.59199 -14.48115 -13.97673 -13.51125 -13.40397 -12.85103 -12.72995 -12.29535 -12.17049 -12.06193 -11.55964 -11.46198 -11.02890 -10.86541 -10.71464 -10.44132 -10.08670 -9.92612 -9.64774 -9.20282 -8.93219 -8.46545 -8.30259 -7.15911 -5.92428 -3.94962 1.10796 1.29613 3.37462 3.43246 3.49053 3.70936 4.13432 4.44215 4.50923 4.73600 4.86288 5.08908 5.39100 5.44033 5.46715 5.53979 5.61110 5.72824 5.92094 5.93841 6.09378 6.24168 6.39242 6.67985 6.77296 6.92350 7.15865 7.40743 7.72881 7.80276 7.94949 8.14352 8.32519 8.59109 8.66912 9.12191 9.69819 11.14717 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.034927 B = 0.005592 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.473211 B = 5006.221566 C = 5334.367376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.113 3.887 3 C -0.167 4.167 4 C -0.105 4.105 5 C 0.071 3.929 6 O -0.476 6.476 7 C 0.128 3.872 8 C 0.113 3.887 9 N -0.671 5.671 10 C 0.213 3.787 11 H 0.034 0.966 12 C -0.169 4.169 13 C -0.491 4.491 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.274 1.274 21 N -0.467 5.467 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.385 0.615 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.327 0.673 31 H 0.028 0.972 32 H 0.006 0.994 33 H 0.089 0.911 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 13.875 -7.239 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.025 4.025 3 C -0.187 4.187 4 C -0.131 4.131 5 C 0.023 3.977 6 O -0.284 6.284 7 C -0.011 4.011 8 C -0.017 4.017 9 N -0.301 5.301 10 C 0.105 3.895 11 H 0.052 0.948 12 C -0.229 4.229 13 C -0.530 4.530 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.199 1.199 21 N -0.178 5.178 22 H 0.093 0.907 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.151 0.849 26 H 0.154 0.846 27 H 0.241 0.759 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.144 0.856 31 H 0.047 0.953 32 H 0.025 0.975 33 H 0.108 0.892 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.268 13.282 -6.590 16.976 hybrid contribution 0.382 0.077 0.097 0.401 sum -7.886 13.359 -6.493 16.817 Atomic orbital electron populations 1.20666 0.88943 1.03383 1.02787 1.21260 0.97003 0.88289 0.95949 1.21792 0.94073 0.99172 1.03678 1.21888 0.94749 0.98056 0.98454 1.19242 0.84494 0.92302 1.01633 1.84970 1.14775 1.96014 1.32612 1.21928 0.88853 0.96268 0.94080 1.20686 0.97702 0.89253 0.94109 1.60876 1.27261 1.33557 1.08430 1.19190 0.91317 0.81148 0.97804 0.94791 1.22434 0.98819 1.05517 0.96081 1.21151 1.28332 1.01247 1.02261 0.91974 1.24941 0.96800 0.95819 0.97003 1.69889 1.42498 1.06730 1.34786 0.86501 0.79245 0.77937 0.83722 1.20886 1.21402 1.19882 1.67401 1.08997 1.29192 1.12240 0.90697 0.90421 0.90927 0.84921 0.84551 0.75934 0.90164 0.94451 0.85607 0.95329 0.97496 0.89243 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 36.00 0.37 -0.62 16 2 C 0.11 1.52 6.78 -82.58 -0.56 0.96 16 3 C -0.17 -1.95 9.73 -39.46 -0.38 -2.33 16 4 C -0.11 -1.33 10.13 -39.14 -0.40 -1.73 16 5 C 0.07 1.09 6.70 -39.08 -0.26 0.83 16 6 O -0.48 -7.14 12.57 -19.46 -0.24 -7.39 16 7 C 0.13 2.22 6.31 -82.41 -0.52 1.70 16 8 C 0.11 2.19 5.55 -4.98 -0.03 2.16 16 9 N -0.67 -15.37 6.22 -109.22 -0.68 -16.05 16 10 C 0.21 5.55 2.57 -68.87 -0.18 5.38 16 11 H 0.03 0.96 7.80 -51.93 -0.41 0.55 16 12 C -0.17 -4.23 8.94 37.15 0.33 -3.90 16 13 C -0.49 -14.08 8.84 -34.44 -0.30 -14.38 16 14 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.05 1.55 5.30 -17.82 -0.09 1.45 16 16 N -0.90 -26.20 11.32 55.43 0.63 -25.57 16 17 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 N -0.47 -7.80 10.18 -5.62 -0.06 -7.86 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 25 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.39 3.72 9.06 45.56 0.41 4.14 16 28 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 29 H 0.04 0.74 7.44 -51.93 -0.39 0.35 16 30 H 0.33 7.47 8.46 -39.29 -0.33 7.14 16 31 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -32.34 290.63 -6.90 -39.24 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.88 Total: 6.69 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.03 Total: -10.48 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.11 Total: -49.48 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.24 Total: -7.39 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.34 -6.90 -39.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134974247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.154 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds