Wall clock time and date at job start Sun Mar 29 2020 21:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47275 * 270.00424 * 3 2 1 5 5 H 1.48504 * 109.47210 * 30.00501 * 3 2 1 6 6 H 1.48505 * 109.47341 * 150.00532 * 3 2 1 7 7 C 1.37875 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00040 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00218 * 179.97438 * 7 2 1 10 10 N 1.46490 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99967 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00277 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00240 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00111 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46958 * 179.97438 * 14 13 11 16 16 C 1.38386 * 120.00040 * 94.99954 * 15 14 13 17 17 N 1.32124 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.32158 * 120.00097 * 359.97438 * 17 16 15 19 19 C 1.38336 * 120.00075 * 0.26620 * 18 17 16 20 20 N 1.32127 * 120.00065 * 274.97742 * 15 14 13 21 21 H 0.97001 * 119.99742 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46776 * 59.99300 * 9 7 2 23 23 H 1.09004 * 109.46825 * 300.00158 * 9 7 2 24 24 H 0.96999 * 120.00109 * 359.97438 * 10 9 7 25 25 H 0.97007 * 119.99456 * 359.97438 * 13 11 10 26 26 H 1.09000 * 109.46947 * 60.00108 * 14 13 11 27 27 H 1.08998 * 109.47234 * 299.99231 * 14 13 11 28 28 H 1.08005 * 120.00186 * 359.97438 * 16 15 14 29 29 H 1.08002 * 119.99718 * 179.97438 * 18 17 16 30 30 H 1.07998 * 120.00403 * 179.72028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 5.3249 -2.8216 -0.0024 12 8 6.1150 -1.8975 -0.0021 13 7 5.7742 -4.0923 -0.0039 14 6 7.2145 -4.3600 -0.0047 15 6 7.4487 -5.8487 -0.0058 16 6 7.6590 -6.5152 -1.2002 17 7 7.8648 -7.8203 -1.2010 18 6 7.8704 -8.4891 -0.0612 19 6 7.6553 -7.8237 1.1324 20 7 7.4538 -6.5175 1.1337 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8745 -0.6801 -0.8912 24 1 3.3695 -3.3125 -0.0021 25 1 5.1437 -4.8296 -0.0046 26 1 7.6658 -3.9222 0.8857 27 1 7.6653 -3.9203 -0.8944 28 1 7.6548 -5.9686 -2.1317 29 1 8.0383 -9.5560 -0.0620 30 1 7.6554 -8.3709 2.0634 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243215324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:15 Heat of formation + Delta-G solvation = -9.247221 kcal Electronic energy + Delta-G solvation = -15481.657685 eV Core-core repulsion = 12697.118051 eV Total energy + Delta-G solvation = -2784.539634 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14473 -40.84054 -36.68194 -35.96532 -35.05305 -34.40190 -32.74284 -30.01485 -27.83010 -25.59242 -24.37055 -23.43196 -21.95720 -20.05763 -18.65895 -18.45316 -17.95989 -17.59007 -16.57434 -16.51465 -16.41456 -15.75632 -15.18058 -15.00328 -14.66641 -14.39611 -14.29089 -13.71767 -13.35313 -13.01218 -12.67780 -12.61657 -12.29671 -11.90619 -11.64463 -11.39326 -10.90106 -10.38674 -10.35669 -10.08302 -9.69364 -8.38283 -6.45326 -0.32625 0.08912 1.35930 1.37660 1.51271 1.83335 2.18690 2.30884 2.72450 2.95255 2.97529 3.30794 3.45773 3.50461 3.74672 4.12836 4.35550 4.54686 4.58908 4.67085 4.78840 5.07600 5.26078 5.35643 5.39121 5.54376 5.92967 6.23294 6.27721 6.56593 6.75903 7.13030 7.23060 7.62569 8.76533 Molecular weight = 236.10amu Principal moments of inertia in cm(-1) A = 0.056855 B = 0.004204 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.362818 B = 6658.842088 C = 6866.935847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.251 3.749 10 N -0.721 5.721 11 C 0.700 3.300 12 O -0.639 6.639 13 N -0.729 5.729 14 C 0.199 3.801 15 C 0.053 3.947 16 C 0.068 3.932 17 N -0.461 5.461 18 C 0.061 3.939 19 C 0.051 3.949 20 N -0.451 5.451 21 H 0.272 0.728 22 H 0.011 0.989 23 H 0.013 0.987 24 H 0.404 0.596 25 H 0.406 0.594 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.187 0.813 29 H 0.208 0.792 30 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.988 -17.455 -0.081 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.375 5.375 11 C 0.399 3.601 12 O -0.521 6.521 13 N -0.386 5.386 14 C 0.073 3.927 15 C -0.087 4.087 16 C -0.091 4.091 17 N -0.175 5.175 18 C -0.099 4.099 19 C -0.110 4.110 20 N -0.167 5.167 21 H 0.082 0.918 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.239 0.761 25 H 0.241 0.759 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.204 0.796 29 H 0.224 0.776 30 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 16.539 -16.464 -0.100 23.337 hybrid contribution -0.656 0.192 0.103 0.692 sum 15.882 -16.272 0.003 22.738 Atomic orbital electron populations 1.69985 1.07735 1.28639 1.50763 1.25596 0.95547 1.02730 0.93531 0.85831 0.79254 0.79116 0.79538 1.18837 1.19874 1.18361 1.21285 0.89962 0.94567 1.52657 0.92417 1.18973 0.92968 0.79672 0.95713 1.45109 1.04551 1.10004 1.77793 1.16085 0.82745 0.83420 0.77832 1.90844 1.56067 1.44723 1.60497 1.44800 1.07854 1.05336 1.80588 1.19821 0.80587 0.88388 1.03859 1.21997 0.99413 0.96749 0.90546 1.23903 0.94514 0.91189 0.99450 1.68596 1.09822 1.08232 1.30859 1.24497 0.93745 1.03469 0.88213 1.24423 0.94881 0.89969 1.01677 1.68280 1.08712 1.10042 1.29676 0.91838 0.97075 0.96927 0.76085 0.75880 0.91118 0.88658 0.79619 0.77557 0.77934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 13.96 21.45 0.30 -55.69 16 2 C 0.03 1.49 5.47 84.65 0.46 1.95 16 3 Si 0.94 44.28 27.47 68.60 1.88 46.16 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 7 C -0.55 -30.49 9.83 25.60 0.25 -30.24 16 8 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 9 C 0.25 12.51 4.50 85.64 0.38 12.89 16 10 N -0.72 -29.65 5.55 -482.31 -2.68 -32.32 16 11 C 0.70 27.10 8.57 179.05 1.53 28.64 16 12 O -0.64 -29.77 16.34 -3.98 -0.06 -29.84 16 13 N -0.73 -20.34 5.55 -482.29 -2.68 -23.02 16 14 C 0.20 4.75 6.00 85.64 0.51 5.26 16 15 C 0.05 1.05 6.15 42.55 0.26 1.31 16 16 C 0.07 1.18 10.86 84.68 0.92 2.10 16 17 N -0.46 -7.92 10.50 -195.22 -2.05 -9.96 16 18 C 0.06 0.72 11.22 84.67 0.95 1.67 16 19 C 0.05 0.66 11.22 84.67 0.95 1.61 16 20 N -0.45 -9.10 10.42 -183.29 -1.91 -11.01 16 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 22 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 23 H 0.01 0.66 7.57 -2.38 -0.02 0.64 16 24 H 0.40 14.61 8.34 -92.71 -0.77 13.83 16 25 H 0.41 9.51 8.48 -92.70 -0.79 8.72 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.10 2.10 8.05 -2.39 -0.02 2.08 16 28 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.21 0.75 8.06 -2.91 -0.02 0.72 16 30 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -73.66 272.48 -1.40 -75.06 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.43 Total: 15.43 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 6.23 Total: 25.20 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -9.02 Total: -132.01 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.06 Total: -29.84 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -73.66 -1.40 -75.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243215324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.813 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds