Wall clock time and date at job start Sun Mar 29 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39846 * 126.45774 * 2 1 4 4 C 1.35454 * 107.85898 * 180.30228 * 3 2 1 5 5 N 1.35530 * 108.87850 * 359.74222 * 4 3 2 6 6 H 0.96995 * 125.67999 * 179.97438 * 5 4 3 7 7 C 1.37650 * 108.64109 * 359.97438 * 5 4 3 8 8 C 1.46675 * 126.23387 * 180.02562 * 7 5 4 9 9 O 1.21698 * 120.00279 * 188.57716 * 8 7 5 10 10 N 1.34781 * 119.99977 * 8.58027 * 8 7 5 11 11 C 1.46497 * 119.99845 * 0.72383 * 10 8 7 12 12 C 1.46504 * 119.99880 * 180.72397 * 10 8 7 13 13 H 1.09000 * 109.47073 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.46954 * 239.99889 * 12 10 8 15 15 C 1.50700 * 109.46973 * 120.00141 * 12 10 8 16 16 H 1.08001 * 120.00147 * 34.92755 * 15 12 10 17 17 C 1.37878 * 119.99844 * 214.93002 * 15 12 10 18 18 N 1.31509 * 119.99911 * 184.87510 * 17 15 12 19 19 Si 1.86797 * 119.99819 * 4.87705 * 17 15 12 20 20 H 1.48494 * 109.47518 * 94.85626 * 19 17 15 21 21 H 1.48509 * 109.47197 * 214.85640 * 19 17 15 22 22 H 1.48501 * 109.47579 * 334.85337 * 19 17 15 23 23 H 1.09004 * 109.47260 * 270.13896 * 1 2 3 24 24 H 1.09008 * 109.47214 * 30.13387 * 1 2 3 25 25 H 1.08999 * 109.47550 * 150.13514 * 1 2 3 26 26 H 1.07990 * 126.06719 * 0.02562 * 3 2 1 27 27 H 1.08001 * 125.55794 * 179.70591 * 4 3 2 28 28 H 1.09003 * 109.46960 * 276.38069 * 11 10 8 29 29 H 1.08992 * 109.47172 * 36.37990 * 11 10 8 30 30 H 1.08997 * 109.46903 * 156.38251 * 11 10 8 31 31 H 1.09005 * 109.47176 * 54.94952 * 14 12 10 32 32 H 1.09004 * 109.47323 * 294.95639 * 14 12 10 33 33 H 1.08998 * 109.47412 * 174.95375 * 14 12 10 34 34 H 0.97002 * 120.00163 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6217 0.6928 -0.0068 5 7 3.6284 -0.6625 -0.0053 6 1 4.4190 -1.2244 -0.0095 7 6 2.3263 -1.1089 0.0032 8 6 1.8898 -2.5092 0.0080 9 8 0.7129 -2.7803 -0.1418 10 7 2.7922 -3.4957 0.1782 11 6 4.2067 -3.1687 0.3744 12 6 2.3585 -4.8951 0.1672 13 1 1.2808 -4.9402 0.0105 14 6 2.7063 -5.5474 1.5067 15 6 3.0598 -5.6295 -0.9463 16 1 4.0767 -5.3742 -1.2051 17 6 2.4030 -6.6274 -1.6348 18 7 3.0442 -7.3330 -2.5406 19 14 0.6025 -6.9769 -1.2808 20 1 -0.2453 -6.2352 -2.2484 21 1 0.3458 -8.4337 -1.4129 22 1 0.2755 -6.5400 0.1003 23 1 -0.3634 0.0025 1.0277 24 1 -0.3634 0.8888 -0.5159 25 1 -0.3634 -0.8912 -0.5117 26 1 2.0137 2.1548 0.0004 27 1 4.4972 1.3252 -0.0130 28 1 4.6817 -3.0145 -0.5945 29 1 4.2902 -2.2590 0.9689 30 1 4.7005 -3.9894 0.8946 31 1 2.2726 -4.9636 2.3187 32 1 3.7896 -5.5828 1.6232 33 1 2.3048 -6.5604 1.5327 34 1 2.5823 -8.0353 -3.0246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280516106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:20 Heat of formation + Delta-G solvation = 3.975304 kcal Electronic energy + Delta-G solvation = -17090.089565 eV Core-core repulsion = 14409.663646 eV Total energy + Delta-G solvation = -2680.425919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.40267 -40.11565 -37.33928 -34.91158 -33.50876 -32.44562 -30.16381 -28.58284 -27.41774 -27.09944 -24.00751 -21.99944 -21.20302 -19.92034 -19.20491 -18.36516 -17.47903 -16.81761 -16.47103 -15.82645 -14.96905 -14.85143 -14.69554 -14.49855 -14.30691 -14.04504 -13.88268 -13.59770 -13.30061 -13.11247 -13.04807 -12.88843 -12.56331 -12.50939 -12.34210 -11.82418 -11.29870 -10.81743 -10.79610 -9.68543 -9.52580 -8.99746 -8.41100 -6.45073 0.56326 1.24188 1.31580 1.40868 1.88985 2.10407 2.24917 2.39171 2.47039 3.01567 3.71600 4.04832 4.27701 4.30626 4.35877 4.45055 4.48942 4.67927 4.70559 4.76827 4.89720 4.91237 5.04691 5.08370 5.19705 5.31010 5.48929 5.50775 5.72171 5.85835 6.04057 6.15901 6.58760 6.60215 6.67013 7.18760 7.29901 8.74137 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.007842 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.724070 B = 3569.707229 C = 3936.878386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.099 4.099 3 C -0.225 4.225 4 C 0.039 3.961 5 N -0.540 5.540 6 H 0.430 0.570 7 C -0.085 4.085 8 C 0.566 3.434 9 O -0.588 6.588 10 N -0.598 5.598 11 C 0.065 3.935 12 C 0.220 3.780 13 H 0.044 0.956 14 C -0.139 4.139 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.030 3.970 18 N -0.932 5.932 19 Si 0.923 3.077 20 H -0.286 1.286 21 H -0.272 1.272 22 H -0.250 1.250 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.165 0.835 27 H 0.218 0.782 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 15.804 8.039 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.249 4.249 4 C -0.097 4.097 5 N -0.144 5.144 6 H 0.278 0.722 7 C -0.198 4.198 8 C 0.357 3.643 9 O -0.470 6.470 10 N -0.328 5.328 11 C -0.078 4.078 12 C 0.118 3.882 13 H 0.062 0.938 14 C -0.198 4.198 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.170 4.170 18 N -0.571 5.571 19 Si 0.749 3.251 20 H -0.212 1.212 21 H -0.197 1.197 22 H -0.174 1.174 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.183 0.817 27 H 0.234 0.766 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.803 15.296 7.844 17.417 hybrid contribution -0.425 -0.989 -0.430 1.160 sum 2.377 14.307 7.414 16.288 Atomic orbital electron populations 1.20303 0.89878 1.02409 1.02003 1.20291 0.96229 0.91862 1.02465 1.21089 0.92003 0.98840 1.12928 1.22834 1.00607 0.82857 1.03444 1.43229 1.06817 1.08322 1.56083 0.72161 1.20070 0.85650 0.92398 1.21655 1.17731 0.85430 0.84489 0.76613 1.90691 1.18620 1.83917 1.53802 1.48196 1.08285 1.06827 1.69482 1.22168 0.81409 1.02743 1.01486 1.19257 0.96306 0.77969 0.94715 0.93793 1.22083 1.01943 0.99889 0.95868 1.21335 1.00410 1.17443 1.16707 0.92786 1.25611 1.01386 0.95643 0.94345 1.69980 1.38297 1.22707 1.26149 0.86085 0.81499 0.77531 0.80012 1.21238 1.19728 1.17354 0.91521 0.89836 0.93224 0.81710 0.76578 0.92309 0.89087 0.89137 0.93551 0.91600 0.92874 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.71 9.92 71.23 0.71 -2.01 16 2 C -0.10 -3.11 6.21 -19.56 -0.12 -3.23 16 3 C -0.23 -5.08 10.76 22.02 0.24 -4.85 16 4 C 0.04 0.72 11.89 83.48 0.99 1.72 16 5 N -0.54 -13.17 5.07 -183.62 -0.93 -14.10 16 6 H 0.43 8.65 4.87 -92.71 -0.45 8.20 16 7 C -0.09 -2.95 6.67 40.35 0.27 -2.69 16 8 C 0.57 24.80 7.64 86.45 0.66 25.46 16 9 O -0.59 -30.18 14.11 -4.34 -0.06 -30.24 16 10 N -0.60 -25.12 2.75 -831.52 -2.29 -27.41 16 11 C 0.06 1.96 7.93 127.77 1.01 2.98 16 12 C 0.22 10.63 2.26 44.24 0.10 10.73 16 13 H 0.04 2.38 3.82 -2.39 -0.01 2.37 16 14 C -0.14 -5.66 9.07 71.98 0.65 -5.01 16 15 C -0.52 -28.96 8.82 25.60 0.23 -28.73 16 16 H 0.05 3.18 7.67 -2.91 -0.02 3.16 16 17 C 0.03 1.74 5.47 84.66 0.46 2.21 16 18 N -0.93 -57.09 13.96 21.45 0.30 -56.79 16 19 Si 0.92 46.61 27.31 68.60 1.87 48.49 16 20 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 21 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.25 -12.11 6.37 99.48 0.63 -11.47 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.08 2.02 8.14 -2.38 -0.02 2.01 16 25 H 0.05 1.86 6.36 -2.39 -0.02 1.84 16 26 H 0.17 2.73 8.06 -2.92 -0.02 2.71 16 27 H 0.22 1.74 8.06 -2.91 -0.02 1.72 16 28 H 0.06 1.73 7.73 -2.39 -0.02 1.71 16 29 H 0.09 2.10 5.19 -2.39 -0.01 2.08 16 30 H 0.09 2.65 6.54 -2.39 -0.02 2.63 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 2.42 6.87 -2.38 -0.02 2.41 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.86 276.46 4.68 -70.17 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.59 Total: 13.30 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 5.20 Total: -3.43 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -2.92 Total: -98.30 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.06 Total: -30.24 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.87 Total: 48.49 kcal Total: -74.86 4.68 -70.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280516106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.150 kcal (2) G-P(sol) polarization free energy of solvation -74.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds