Wall clock time and date at job start Sun Mar 29 2020 21:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00034 * 2 1 4 4 N 1.46494 * 109.47379 * 125.00461 * 3 2 1 5 5 C 1.46504 * 119.99547 * 263.68440 * 4 3 2 6 6 C 1.50708 * 109.47005 * 269.99506 * 5 4 3 7 7 H 1.07999 * 119.99684 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99863 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00404 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99683 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46955 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46521 * 119.99936 * 10 8 6 13 13 H 1.48494 * 109.47342 * 240.00183 * 10 8 6 14 14 C 1.34769 * 120.00168 * 83.67870 * 4 3 2 15 15 O 1.21553 * 120.00019 * 184.36386 * 14 4 3 16 16 C 1.47869 * 120.00111 * 4.36606 * 14 4 3 17 17 N 1.34556 * 126.04872 * 173.84892 * 16 14 4 18 18 C 1.30869 * 107.26869 * 180.02562 * 17 16 14 19 19 N 1.34587 * 107.62379 * 359.97438 * 18 17 16 20 20 H 0.97003 * 125.74711 * 179.74531 * 19 18 17 21 21 N 1.28844 * 108.50376 * 359.97438 * 19 18 17 22 22 H 1.07996 * 119.99997 * 179.97438 * 1 2 3 23 23 H 1.08004 * 120.00147 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99835 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47160 * 4.99793 * 3 2 1 26 26 H 1.09008 * 109.47131 * 245.00470 * 3 2 1 27 27 H 1.08999 * 109.47354 * 29.99579 * 5 4 3 28 28 H 1.09000 * 109.47208 * 150.00209 * 5 4 3 29 29 H 0.96993 * 120.00388 * 179.97438 * 9 8 6 30 30 H 1.07993 * 126.18473 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.6070 1.9891 2.3822 6 6 3.0173 3.4385 2.3359 7 1 3.5158 3.8309 1.4619 8 6 2.7561 4.2635 3.4093 9 7 2.1495 3.7856 4.4737 10 14 3.2652 6.0599 3.3520 11 1 3.9261 6.3460 2.0533 12 1 2.0630 6.9198 3.4952 13 1 4.2107 6.3421 4.4618 14 6 4.2054 0.7519 1.0214 15 8 4.9460 0.7043 1.9840 16 6 4.6337 0.1735 -0.2703 17 7 5.8513 -0.3270 -0.5489 18 6 5.8276 -0.7373 -1.7914 19 7 4.5974 -0.4910 -2.2785 20 1 4.2942 -0.6890 -3.1784 21 7 3.8918 0.0563 -1.3497 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4026 -0.9315 27 1 1.5266 1.9212 2.5094 28 1 3.1031 1.4978 3.2193 29 1 1.9661 4.3659 5.2290 30 1 6.6471 -1.1914 -2.3286 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359404970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:47 Heat of formation + Delta-G solvation = 90.251193 kcal Electronic energy + Delta-G solvation = -16499.386370 eV Core-core repulsion = 13719.161310 eV Total energy + Delta-G solvation = -2780.225059 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.32233 -38.77482 -35.66166 -33.32142 -33.10000 -32.11949 -31.27246 -27.65782 -25.62474 -24.30183 -22.92448 -21.93368 -19.93431 -19.18737 -18.14131 -16.66964 -16.44102 -16.07873 -15.47149 -14.62450 -14.56460 -14.20232 -13.96725 -12.84550 -12.76296 -12.29060 -12.13284 -11.30655 -11.25506 -10.97209 -10.83058 -10.57962 -10.56366 -10.24973 -10.13886 -9.67350 -9.49933 -9.25051 -8.98519 -8.40732 -7.68548 -6.01648 -4.06547 1.57610 2.39073 2.58996 2.71222 3.32852 3.40322 3.44401 3.64002 3.99718 4.44448 4.55696 4.62198 5.02746 5.32936 5.36375 5.55146 5.87191 6.07774 6.18998 6.27615 6.48093 6.77699 6.93120 7.01452 7.14120 7.45660 7.55347 7.94194 8.09033 8.24183 8.38207 8.88803 9.04596 9.58342 11.06539 Molecular weight = 236.10amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.007707 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.705135 B = 3632.379893 C = 4198.561870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.128 3.872 4 N -0.575 5.575 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.596 3.404 15 O -0.512 6.512 16 C 0.168 3.832 17 N -0.465 5.465 18 C 0.186 3.814 19 N -0.411 5.411 20 H 0.446 0.554 21 N -0.276 5.276 22 H 0.091 0.909 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.263 0.737 30 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -8.898 -16.194 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.163 4.163 3 C 0.005 3.995 4 N -0.306 5.306 5 C 0.129 3.871 6 C -0.567 4.567 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.377 3.623 15 O -0.384 6.384 16 C -0.113 4.113 17 N -0.189 5.189 18 C -0.112 4.112 19 N -0.133 5.133 20 H 0.292 0.708 21 N -0.116 5.116 22 H 0.109 0.891 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.397 -8.609 -15.059 17.351 hybrid contribution 0.233 0.640 -0.886 1.118 sum 0.630 -7.969 -15.945 17.837 Atomic orbital electron populations 1.23744 0.95778 1.01483 1.02406 1.23278 0.95904 0.98931 0.98194 1.20923 0.92995 0.95021 0.90609 1.48061 1.12813 1.53216 1.16490 1.19416 0.96194 0.91934 0.79596 1.21482 1.38758 0.94176 1.02304 0.92257 1.24923 0.95035 0.98966 0.95078 1.69941 1.41649 1.35965 1.05666 0.86432 0.78236 0.84531 0.78176 1.19787 1.20958 1.20812 1.16443 0.82697 0.79219 0.83893 1.90798 1.52940 1.57649 1.37002 1.24474 0.88195 1.03322 0.95310 1.71332 1.21088 1.14458 1.12058 1.26671 0.90523 1.02083 0.91902 1.45323 1.10188 1.43629 1.14122 0.70808 1.74621 1.22438 1.16049 0.98504 0.89071 0.88401 0.88343 0.89596 0.88379 0.94366 0.93417 0.92722 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 14.32 29.01 0.42 -2.33 16 2 C -0.14 -2.28 9.00 -36.03 -0.32 -2.60 16 3 C 0.13 2.33 5.45 -5.20 -0.03 2.30 16 4 N -0.57 -13.11 2.46 -177.54 -0.44 -13.55 16 5 C 0.25 6.66 5.17 -5.19 -0.03 6.63 16 6 C -0.53 -15.27 9.39 -34.44 -0.32 -15.60 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 10 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.60 14.04 7.62 -12.32 -0.09 13.94 16 15 O -0.51 -14.14 16.65 5.32 0.09 -14.05 16 16 C 0.17 3.19 7.66 -156.35 -1.20 1.99 16 17 N -0.47 -8.02 11.41 -12.37 -0.14 -8.16 16 18 C 0.19 1.93 13.14 -90.48 -1.19 0.74 16 19 N -0.41 -3.91 6.93 29.56 0.20 -3.71 16 20 H 0.45 1.99 8.96 -190.21 -1.71 0.29 16 21 N -0.28 -4.03 7.98 32.07 0.26 -3.78 16 22 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 23 H 0.10 1.33 7.84 -52.48 -0.41 0.91 16 24 H 0.10 1.58 7.87 -52.49 -0.41 1.16 16 25 H 0.09 1.56 7.68 -51.93 -0.40 1.16 16 26 H 0.10 1.66 5.31 -51.92 -0.28 1.38 16 27 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 28 H 0.05 1.44 7.36 -51.93 -0.38 1.05 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 30 H 0.23 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 272.10 15.07 4.10 4.10 Total: -1.00 -36.79 272.10 -7.47 -44.27 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -4.40 Total: -2.96 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.86 Total: 6.78 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.62 Total: -55.26 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -36.79 -7.47 -44.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359404970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.518 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds