Wall clock time and date at job start Sun Mar 29 2020 21:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 120.00191 * 2 1 4 4 H 1.08001 * 120.00028 * 204.40698 * 3 2 1 5 5 C 1.38817 * 120.00010 * 24.39994 * 3 2 1 6 6 N 1.31616 * 119.99880 * 8.24174 * 5 3 2 7 7 Si 1.86798 * 119.99994 * 188.23817 * 5 3 2 8 8 H 1.48498 * 109.46863 * 90.00000 * 7 5 3 9 9 H 1.48493 * 109.47114 * 210.00282 * 7 5 3 10 10 H 1.48507 * 109.47055 * 330.00405 * 7 5 3 11 11 C 1.46493 * 120.00140 * 179.97438 * 2 1 3 12 12 C 1.50709 * 109.47099 * 90.00082 * 11 2 1 13 13 O 1.21273 * 119.99605 * 0.02562 * 12 11 2 14 14 N 1.34774 * 119.99807 * 179.97438 * 12 11 2 15 15 C 1.39402 * 119.99670 * 185.51633 * 14 12 11 16 16 C 1.39234 * 120.08531 * 174.51357 * 15 14 12 17 17 N 1.31953 * 119.90002 * 179.97438 * 16 15 14 18 18 C 1.32244 * 120.08206 * 0.02562 * 17 16 15 19 19 C 1.38219 * 120.16543 * 0.24925 * 18 17 16 20 20 N 1.32209 * 120.09819 * 359.48367 * 19 18 17 21 21 H 1.09002 * 109.47407 * 275.10267 * 1 2 3 22 22 H 1.09009 * 109.46589 * 35.10238 * 1 2 3 23 23 H 1.08996 * 109.47029 * 155.10138 * 1 2 3 24 24 H 0.96999 * 120.00172 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.47383 * 330.00203 * 11 2 1 26 26 H 1.08996 * 109.47636 * 210.00614 * 11 2 1 27 27 H 0.96991 * 120.00518 * 5.52514 * 14 12 11 28 28 H 1.08000 * 120.04597 * 359.97438 * 16 15 14 29 29 H 1.07996 * 119.92248 * 179.97438 * 18 17 16 30 30 H 1.08006 * 119.94960 * 179.72490 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1573 1.2277 -0.3865 5 6 1.5487 2.3345 0.4966 6 7 0.3889 2.2560 1.1139 7 14 2.3860 3.9913 0.2890 8 1 1.9461 4.6117 -0.9865 9 1 2.0188 4.8770 1.4229 10 1 3.8588 3.8021 0.2654 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7043 -1.4201 13 8 2.0550 -1.0220 -2.3422 14 7 3.1117 -2.8517 -1.6659 15 6 3.4450 -3.1975 -2.9745 16 6 4.2279 -4.3221 -3.2215 17 7 4.5408 -4.6463 -4.4617 18 6 4.1123 -3.9043 -5.4690 19 6 3.3397 -2.7840 -5.2270 20 7 3.0177 -2.4559 -3.9875 21 1 -0.3634 0.0914 1.0236 22 1 -0.3633 0.8409 -0.5910 23 1 -0.3633 -0.9321 -0.4326 24 1 -0.0313 3.0585 1.4606 25 1 1.6084 -2.0281 0.5147 26 1 3.1498 -1.1382 0.5144 27 1 3.3568 -3.4369 -0.9322 28 1 4.5784 -4.9281 -2.3991 29 1 4.3703 -4.1718 -6.4830 30 1 2.9953 -2.1781 -6.0521 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595306116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:37 Heat of formation + Delta-G solvation = 60.746969 kcal Electronic energy + Delta-G solvation = -16181.748949 eV Core-core repulsion = 13400.244491 eV Total energy + Delta-G solvation = -2781.504458 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12114 -38.93098 -35.47804 -34.58363 -33.77835 -31.38333 -30.32228 -27.30778 -25.83612 -24.81118 -23.84606 -21.66570 -20.04396 -18.13817 -17.20591 -16.82229 -16.71270 -15.80462 -15.27005 -14.90437 -14.48049 -14.13098 -13.59377 -13.28522 -12.93125 -12.89997 -11.81532 -11.55007 -11.37280 -11.11726 -10.87541 -10.71934 -10.45742 -10.39918 -10.01077 -9.94010 -9.63140 -8.74742 -8.49284 -8.30572 -6.81917 -5.75381 -3.24464 0.85157 1.26635 3.02218 3.25720 3.40137 3.45749 3.46992 3.92134 4.28744 4.35347 4.47563 4.53358 5.08947 5.20487 5.37654 5.43209 5.49450 5.65607 6.04775 6.12674 6.20414 6.66865 6.75336 7.23395 7.41672 7.55056 7.70959 7.80974 8.02604 8.34431 8.78287 9.18665 9.78275 10.25307 11.29415 Molecular weight = 236.10amu Principal moments of inertia in cm(-1) A = 0.041749 B = 0.005724 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.512923 B = 4890.136391 C = 5171.573937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.573 5.573 3 C -0.255 4.255 4 H 0.066 0.934 5 C 0.007 3.993 6 N -0.907 5.907 7 Si 0.910 3.090 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.139 3.861 12 C 0.457 3.543 13 O -0.451 6.451 14 N -0.665 5.665 15 C 0.326 3.674 16 C 0.006 3.994 17 N -0.416 5.416 18 C -0.010 4.010 19 C 0.090 3.910 20 N -0.436 5.436 21 H 0.037 0.963 22 H 0.046 0.954 23 H -0.004 1.004 24 H 0.254 0.746 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.414 0.586 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 -13.235 -6.238 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.292 5.292 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.191 4.191 6 N -0.552 5.552 7 Si 0.740 3.260 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.005 3.995 12 C 0.241 3.759 13 O -0.315 6.315 14 N -0.314 5.314 15 C 0.091 3.909 16 C -0.161 4.161 17 N -0.130 5.130 18 C -0.170 4.170 19 C -0.072 4.072 20 N -0.157 5.157 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.014 0.986 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.251 0.749 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.604 -12.397 -6.693 15.162 hybrid contribution 0.541 0.609 0.028 0.815 sum 6.145 -11.788 -6.665 14.871 Atomic orbital electron populations 1.20878 0.81813 0.95860 0.99441 1.43619 1.02149 0.99730 1.83675 1.19146 0.98844 0.85948 1.34456 0.91596 1.25034 0.97398 0.98684 0.98004 1.70056 1.17288 1.27624 1.40212 0.86169 0.78914 0.83641 0.77272 1.21343 1.21583 1.20443 1.20699 0.98808 0.90810 0.89194 1.24323 0.76639 0.78823 0.96156 1.90747 1.44044 1.50719 1.46029 1.44573 1.57556 1.24877 1.04429 1.19882 0.92004 0.91304 0.87720 1.23154 1.00119 0.97001 0.95839 1.68251 1.17223 1.28280 0.99205 1.23465 0.99611 0.94660 0.99246 1.23769 0.93793 0.95107 0.94488 1.68639 1.20018 1.28393 0.98697 0.94515 0.93565 0.98591 0.93608 0.90971 0.89828 0.74914 0.81652 0.81754 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.18 8.96 59.85 0.54 4.72 16 2 N -0.57 -14.63 2.41 -182.50 -0.44 -15.07 16 3 C -0.25 -7.17 9.66 -15.06 -0.15 -7.31 16 4 H 0.07 1.86 7.84 -52.49 -0.41 1.44 16 5 C 0.01 0.20 5.19 -17.43 -0.09 0.11 16 6 N -0.91 -26.55 10.54 55.49 0.59 -25.97 16 7 Si 0.91 22.40 29.56 -169.99 -5.03 17.38 16 8 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.14 2.68 6.13 -5.19 -0.03 2.65 16 12 C 0.46 8.87 7.86 -10.98 -0.09 8.79 16 13 O -0.45 -11.06 14.72 5.56 0.08 -10.98 16 14 N -0.67 -9.52 5.39 -11.32 -0.06 -9.58 16 15 C 0.33 4.95 7.43 -154.41 -1.15 3.80 16 16 C 0.01 0.07 11.09 -17.13 -0.19 -0.12 16 17 N -0.42 -5.31 10.49 -12.89 -0.14 -5.44 16 18 C -0.01 -0.11 11.21 -17.38 -0.19 -0.31 16 19 C 0.09 1.19 11.22 -17.40 -0.20 1.00 16 20 N -0.44 -7.66 8.07 -12.17 -0.10 -7.75 16 21 H 0.04 0.97 7.33 -51.93 -0.38 0.59 16 22 H 0.05 1.30 7.30 -51.92 -0.38 0.92 16 23 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 24 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 26 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 27 H 0.41 3.88 8.71 -40.82 -0.36 3.53 16 28 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 269.07 15.07 4.05 4.05 Total: -1.00 -36.25 269.07 -5.77 -42.01 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -3.18 Total: -1.98 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -1.54 Total: 13.32 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.15 Total: -63.82 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -36.25 -5.77 -42.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595306116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.761 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds