Wall clock time and date at job start Sun Mar 29 2020 21:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 120.00191 * 2 1 4 4 H 1.08001 * 120.00028 * 204.40698 * 3 2 1 5 5 C 1.38817 * 120.00010 * 24.39994 * 3 2 1 6 6 N 1.31616 * 119.99880 * 8.24174 * 5 3 2 7 7 Si 1.86798 * 119.99994 * 188.23817 * 5 3 2 8 8 H 1.48498 * 109.46863 * 90.00000 * 7 5 3 9 9 H 1.48493 * 109.47114 * 210.00282 * 7 5 3 10 10 H 1.48507 * 109.47055 * 330.00405 * 7 5 3 11 11 C 1.46493 * 120.00140 * 179.97438 * 2 1 3 12 12 C 1.50709 * 109.47099 * 90.00082 * 11 2 1 13 13 O 1.21273 * 119.99605 * 0.02562 * 12 11 2 14 14 N 1.34774 * 119.99807 * 179.97438 * 12 11 2 15 15 C 1.39402 * 119.99670 * 185.51633 * 14 12 11 16 16 C 1.39234 * 120.08531 * 174.51357 * 15 14 12 17 17 N 1.31953 * 119.90002 * 179.97438 * 16 15 14 18 18 C 1.32244 * 120.08206 * 0.02562 * 17 16 15 19 19 C 1.38219 * 120.16543 * 0.24925 * 18 17 16 20 20 N 1.32209 * 120.09819 * 359.48367 * 19 18 17 21 21 H 1.09002 * 109.47407 * 275.10267 * 1 2 3 22 22 H 1.09009 * 109.46589 * 35.10238 * 1 2 3 23 23 H 1.08996 * 109.47029 * 155.10138 * 1 2 3 24 24 H 0.96999 * 120.00172 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.47383 * 330.00203 * 11 2 1 26 26 H 1.08996 * 109.47636 * 210.00614 * 11 2 1 27 27 H 0.96991 * 120.00518 * 5.52514 * 14 12 11 28 28 H 1.08000 * 120.04597 * 359.97438 * 16 15 14 29 29 H 1.07996 * 119.92248 * 179.97438 * 18 17 16 30 30 H 1.08006 * 119.94960 * 179.72490 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1573 1.2277 -0.3865 5 6 1.5487 2.3345 0.4966 6 7 0.3889 2.2560 1.1139 7 14 2.3860 3.9913 0.2890 8 1 1.9461 4.6117 -0.9865 9 1 2.0188 4.8770 1.4229 10 1 3.8588 3.8021 0.2654 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7043 -1.4201 13 8 2.0550 -1.0220 -2.3422 14 7 3.1117 -2.8517 -1.6659 15 6 3.4450 -3.1975 -2.9745 16 6 4.2279 -4.3221 -3.2215 17 7 4.5408 -4.6463 -4.4617 18 6 4.1123 -3.9043 -5.4690 19 6 3.3397 -2.7840 -5.2270 20 7 3.0177 -2.4559 -3.9875 21 1 -0.3634 0.0914 1.0236 22 1 -0.3633 0.8409 -0.5910 23 1 -0.3633 -0.9321 -0.4326 24 1 -0.0313 3.0585 1.4606 25 1 1.6084 -2.0281 0.5147 26 1 3.1498 -1.1382 0.5144 27 1 3.3568 -3.4369 -0.9322 28 1 4.5784 -4.9281 -2.3991 29 1 4.3703 -4.1718 -6.4830 30 1 2.9953 -2.1781 -6.0521 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595306116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:36 Heat of formation + Delta-G solvation = 33.715096 kcal Electronic energy + Delta-G solvation = -16182.921139 eV Core-core repulsion = 13400.244491 eV Total energy + Delta-G solvation = -2782.676648 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.19877 -40.34800 -37.23164 -36.03768 -34.86785 -33.34729 -31.51344 -28.94400 -27.91108 -25.91276 -25.03945 -23.42620 -21.47674 -19.39356 -18.69526 -18.43897 -17.68461 -17.16686 -16.81740 -16.55485 -15.70248 -15.61197 -15.17868 -14.95718 -14.69946 -13.82925 -13.75108 -13.16814 -12.85004 -12.66213 -12.50144 -12.43394 -12.28566 -12.06020 -11.90351 -11.62076 -11.12092 -10.67451 -9.84381 -9.39675 -8.82329 -7.86951 -5.37965 -0.14886 0.22999 1.42639 1.46434 1.53870 1.82472 1.90244 2.48542 2.88062 3.24092 3.36266 3.43144 3.52843 3.65731 4.13622 4.26982 4.38855 4.57584 4.58638 4.68068 4.79474 5.14186 5.31341 5.58117 5.60375 5.67408 6.14400 6.27609 6.53013 6.95539 7.09981 7.42204 7.78562 8.20190 9.16242 Molecular weight = 236.10amu Principal moments of inertia in cm(-1) A = 0.041749 B = 0.005724 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.512923 B = 4890.136391 C = 5171.573937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.595 5.595 3 C -0.261 4.261 4 H 0.060 0.940 5 C -0.046 4.046 6 N -0.935 5.935 7 Si 0.969 3.031 8 H -0.294 1.294 9 H -0.285 1.285 10 H -0.268 1.268 11 C 0.135 3.865 12 C 0.467 3.533 13 O -0.512 6.512 14 N -0.646 5.646 15 C 0.297 3.703 16 C 0.026 3.974 17 N -0.431 5.431 18 C 0.010 3.990 19 C 0.072 3.928 20 N -0.490 5.490 21 H 0.022 0.978 22 H 0.006 0.994 23 H 0.020 0.980 24 H 0.250 0.750 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.438 0.562 28 H 0.206 0.794 29 H 0.204 0.796 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.845 -15.184 -6.683 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.316 5.316 3 C -0.391 4.391 4 H 0.078 0.922 5 C -0.242 4.242 6 N -0.581 5.581 7 Si 0.797 3.203 8 H -0.221 1.221 9 H -0.211 1.211 10 H -0.193 1.193 11 C 0.004 3.996 12 C 0.251 3.749 13 O -0.382 6.382 14 N -0.298 5.298 15 C 0.062 3.938 16 C -0.139 4.139 17 N -0.145 5.145 18 C -0.149 4.149 19 C -0.088 4.088 20 N -0.212 5.212 21 H 0.041 0.959 22 H 0.025 0.975 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.279 0.721 28 H 0.223 0.777 29 H 0.221 0.779 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.394 -14.449 -7.138 17.731 hybrid contribution 0.084 1.028 0.031 1.032 sum 7.478 -13.421 -7.107 16.927 Atomic orbital electron populations 1.20555 0.82514 0.95341 0.97893 1.43771 1.02187 1.01198 1.84422 1.19354 0.98715 0.87512 1.33522 0.92216 1.25760 0.98229 1.01774 0.98408 1.70189 1.18470 1.28017 1.41387 0.85253 0.78537 0.79848 0.76687 1.22102 1.21127 1.19253 1.21003 0.99737 0.89246 0.89625 1.23815 0.76302 0.79544 0.95200 1.90735 1.46990 1.53076 1.47398 1.43948 1.56513 1.23794 1.05511 1.20072 0.93823 0.92695 0.87197 1.23667 0.97841 0.95570 0.96839 1.68414 1.17785 1.28631 0.99623 1.24052 0.97157 0.92989 1.00721 1.24164 0.94546 0.96335 0.93769 1.68478 1.21669 1.30403 1.00644 0.95947 0.97470 0.96167 0.94035 0.87271 0.87927 0.72070 0.77733 0.77919 0.79698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.42 8.96 127.77 1.14 10.56 16 2 N -0.60 -30.49 2.41 -731.30 -1.76 -32.25 16 3 C -0.26 -14.84 9.66 84.03 0.81 -14.03 16 4 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 5 C -0.05 -2.67 5.19 84.86 0.44 -2.23 16 6 N -0.93 -55.90 10.54 21.65 0.23 -55.67 16 7 Si 0.97 46.63 29.56 68.60 2.03 48.66 16 8 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 9 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 C 0.14 5.02 6.13 85.64 0.52 5.55 16 12 C 0.47 17.69 7.86 87.66 0.69 18.38 16 13 O -0.51 -25.48 14.72 -3.01 -0.04 -25.52 16 14 N -0.65 -17.21 5.39 -308.12 -1.66 -18.87 16 15 C 0.30 8.48 7.43 132.89 0.99 9.46 16 16 C 0.03 0.56 11.09 84.91 0.94 1.50 16 17 N -0.43 -9.55 10.49 -194.71 -2.04 -11.59 16 18 C 0.01 0.20 11.21 84.63 0.95 1.15 16 19 C 0.07 1.82 11.22 84.63 0.95 2.77 16 20 N -0.49 -16.93 8.07 -192.41 -1.55 -18.48 16 21 H 0.02 1.20 7.33 -2.39 -0.02 1.18 16 22 H 0.01 0.38 7.30 -2.38 -0.02 0.36 16 23 H 0.02 0.91 8.03 -2.39 -0.02 0.89 16 24 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.11 3.23 8.07 -2.39 -0.02 3.21 16 26 H 0.10 3.41 8.04 -2.39 -0.02 3.39 16 27 H 0.44 6.82 8.71 -92.71 -0.81 6.01 16 28 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -81.01 269.07 2.99 -78.03 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 0.36 Total: 2.60 kcal Atomic # 6 Polarization: 25.67 SS G_CDS: 7.44 Total: 33.11 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -6.79 Total: -136.86 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.04 Total: -25.52 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -81.01 2.99 -78.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595306116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.741 kcal (2) G-P(sol) polarization free energy of solvation -81.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds