Wall clock time and date at job start Sun Mar 29 2020 22:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34482 * 125.57370 * 2 1 4 4 C 1.46689 * 106.33216 * 179.97438 * 3 2 1 5 5 C 1.47268 * 126.94172 * 180.02562 * 4 3 2 6 6 O 1.21622 * 120.00012 * 168.80189 * 5 4 3 7 7 N 1.34774 * 119.99718 * 348.79392 * 5 4 3 8 8 C 1.46499 * 120.00525 * 1.07088 * 7 5 4 9 9 C 1.46506 * 119.99611 * 181.06322 * 7 5 4 10 10 C 1.50698 * 109.47038 * 90.00727 * 9 7 5 11 11 H 1.07999 * 120.00063 * 359.97438 * 10 9 7 12 12 C 1.37877 * 120.00138 * 180.02562 * 10 9 7 13 13 N 1.31513 * 119.99748 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00044 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47595 * 59.99800 * 14 12 10 16 16 H 1.48506 * 109.47315 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47321 * 299.99478 * 14 12 10 18 18 C 1.36764 * 106.11695 * 359.97438 * 4 3 2 19 19 C 1.50700 * 125.80535 * 179.97438 * 18 4 3 20 20 N 1.34659 * 108.39596 * 0.26661 * 18 4 3 21 21 H 0.97003 * 124.85309 * 179.73916 * 20 18 4 22 22 H 1.09006 * 109.46846 * 89.99636 * 1 2 3 23 23 H 1.08998 * 109.47178 * 209.99800 * 1 2 3 24 24 H 1.08998 * 109.46787 * 330.00289 * 1 2 3 25 25 H 1.08003 * 126.83730 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47558 * 83.35757 * 8 7 5 27 27 H 1.09005 * 109.47211 * 203.36554 * 8 7 5 28 28 H 1.09010 * 109.46665 * 323.36214 * 8 7 5 29 29 H 1.09006 * 109.46736 * 210.00264 * 9 7 5 30 30 H 1.08993 * 109.47086 * 329.99918 * 9 7 5 31 31 H 0.97001 * 119.99955 * 180.02562 * 13 12 10 32 32 H 1.08992 * 109.46849 * 89.99881 * 19 18 4 33 33 H 1.09001 * 109.46476 * 330.00283 * 19 18 4 34 34 H 1.08994 * 109.47646 * 210.00408 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6104 0.0006 5 6 4.8978 1.4300 0.0014 6 8 5.9780 0.9100 0.2064 7 7 4.8206 2.7563 -0.2253 8 6 3.5172 3.3866 -0.4491 9 6 6.0401 3.5678 -0.2476 10 6 6.5864 3.6151 -1.6513 11 1 6.0764 3.0926 -2.4471 12 6 7.7378 4.3246 -1.9195 13 7 8.3590 4.9605 -0.9504 14 14 8.4152 4.3826 -3.6593 15 1 7.4037 4.9847 -4.5647 16 1 9.6513 5.2053 -3.6821 17 1 8.7290 3.0043 -4.1146 18 6 3.5998 -0.7552 0.0015 19 6 4.7721 -1.7021 0.0019 20 7 2.3007 -1.1099 -0.0044 21 1 1.9756 -2.0238 -0.0088 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9630 2.1234 -0.0004 26 1 3.0487 3.6034 0.5109 27 1 3.6528 4.3143 -1.0051 28 1 2.8801 2.7108 -1.0199 29 1 5.8096 4.5794 0.0868 30 1 6.7827 3.1260 0.4166 31 1 9.1689 5.4599 -1.1391 32 1 5.0549 -1.9297 1.0296 33 1 5.6138 -1.2383 -0.5124 34 1 4.4955 -2.6231 -0.5113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603616413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:19 Heat of formation + Delta-G solvation = 15.179805 kcal Electronic energy + Delta-G solvation = -16669.236484 eV Core-core repulsion = 13989.296428 eV Total energy + Delta-G solvation = -2679.940055 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11363 -38.20458 -34.71028 -32.63302 -32.40275 -30.84639 -29.06110 -27.56413 -26.12220 -24.33246 -23.05966 -20.74824 -20.29283 -17.67759 -16.66812 -16.37342 -15.23709 -15.02539 -14.94909 -14.17913 -13.91489 -13.66749 -13.18309 -13.12156 -12.74714 -12.34285 -12.20650 -12.04606 -11.98185 -11.92482 -11.35540 -11.13696 -10.93773 -10.70104 -10.39226 -10.03174 -9.53444 -8.74116 -8.48738 -8.33474 -7.82547 -7.36814 -5.94018 -3.98296 2.20304 2.63287 3.28540 3.38409 3.42024 3.45890 4.20818 4.41265 4.54986 4.88848 5.06254 5.17174 5.38704 5.41961 5.43491 5.56639 5.74618 5.80536 5.86745 5.94272 6.09028 6.11476 6.21262 6.39782 6.49220 7.03938 7.13540 7.31586 7.59781 7.63964 7.74784 8.04348 8.36267 8.67410 9.02872 9.36630 9.66919 11.13769 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.034160 B = 0.006273 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.466973 B = 4462.829796 C = 4742.531600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.004 4.004 3 C -0.178 4.178 4 C -0.214 4.214 5 C 0.577 3.423 6 O -0.552 6.552 7 N -0.596 5.596 8 C 0.073 3.927 9 C 0.246 3.754 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.897 5.897 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.090 3.910 19 C -0.088 4.088 20 N -0.554 5.554 21 H 0.408 0.592 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.160 0.840 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.101 -10.178 1.845 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.223 4.223 5 C 0.365 3.635 6 O -0.433 6.433 7 N -0.327 5.327 8 C -0.071 4.071 9 C 0.126 3.874 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.536 5.536 14 Si 0.725 3.275 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.026 4.026 19 C -0.145 4.145 20 N -0.151 5.151 21 H 0.244 0.756 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.178 0.822 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.419 -10.383 1.989 18.695 hybrid contribution 0.165 -0.215 -1.007 1.043 sum -15.254 -10.598 0.982 18.600 Atomic orbital electron populations 1.20269 0.88152 1.02952 1.02372 1.20239 0.93214 0.86262 1.11570 1.22615 0.91186 0.98217 1.08206 1.20501 0.93625 0.92251 1.15951 1.17274 0.87007 0.81876 0.77313 1.90693 1.29504 1.71848 1.51209 1.47882 1.08597 1.07278 1.68923 1.22207 0.86123 0.99081 0.99710 1.19269 0.80987 0.89493 0.97602 1.21443 1.09419 1.30966 0.94325 0.92547 1.24931 0.96444 0.95451 0.97328 1.69931 1.18870 1.33071 1.31732 0.86573 0.78220 0.78049 0.84634 1.20320 1.21232 1.20236 1.20255 0.84552 0.94462 1.03378 1.20478 0.94861 0.95990 1.03194 1.41461 1.05389 1.08347 1.59896 0.75585 0.91317 0.92167 0.90187 0.82240 0.93963 0.91363 0.90677 0.95141 0.93808 0.92780 0.90683 0.88148 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.41 36.01 0.37 -0.26 16 2 C 0.00 -0.05 7.13 -81.86 -0.58 -0.63 16 3 C -0.18 -2.68 8.72 -37.50 -0.33 -3.01 16 4 C -0.21 -4.01 6.06 -103.35 -0.63 -4.64 16 5 C 0.58 13.56 7.65 -12.59 -0.10 13.46 16 6 O -0.55 -14.81 14.58 5.26 0.08 -14.73 16 7 N -0.60 -13.98 2.86 -184.29 -0.53 -14.51 16 8 C 0.07 1.30 8.73 59.85 0.52 1.82 16 9 C 0.25 6.83 5.14 -5.19 -0.03 6.80 16 10 C -0.52 -15.50 9.39 -34.44 -0.32 -15.82 16 11 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 14 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 18 C 0.09 1.42 7.17 -81.89 -0.59 0.83 16 19 C -0.09 -1.25 9.78 36.01 0.35 -0.90 16 20 N -0.55 -6.66 5.90 -5.42 -0.03 -6.70 16 21 H 0.41 3.38 8.96 -40.82 -0.37 3.02 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.16 2.13 4.86 -52.48 -0.26 1.87 16 26 H 0.04 0.65 7.64 -51.93 -0.40 0.26 16 27 H 0.07 1.22 8.02 -51.93 -0.42 0.81 16 28 H 0.08 1.20 4.84 -51.92 -0.25 0.95 16 29 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 1.36 7.40 -51.93 -0.38 0.97 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.76 6.76 -51.93 -0.35 1.41 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -35.51 286.51 -6.36 -41.87 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.50 Total: -0.36 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.42 Total: -0.67 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.18 Total: -47.90 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.08 Total: -14.73 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.51 -6.36 -41.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603616413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.050 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds