Wall clock time and date at job start Sun Mar 29 2020 22:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34482 * 125.57370 * 2 1 4 4 C 1.46689 * 106.33216 * 179.97438 * 3 2 1 5 5 C 1.47268 * 126.94172 * 180.02562 * 4 3 2 6 6 O 1.21622 * 120.00012 * 168.80189 * 5 4 3 7 7 N 1.34774 * 119.99718 * 348.79392 * 5 4 3 8 8 C 1.46499 * 120.00525 * 1.07088 * 7 5 4 9 9 C 1.46506 * 119.99611 * 181.06322 * 7 5 4 10 10 C 1.50698 * 109.47038 * 90.00727 * 9 7 5 11 11 H 1.07999 * 120.00063 * 359.97438 * 10 9 7 12 12 C 1.37877 * 120.00138 * 180.02562 * 10 9 7 13 13 N 1.31513 * 119.99748 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00044 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47595 * 59.99800 * 14 12 10 16 16 H 1.48506 * 109.47315 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47321 * 299.99478 * 14 12 10 18 18 C 1.36764 * 106.11695 * 359.97438 * 4 3 2 19 19 C 1.50700 * 125.80535 * 179.97438 * 18 4 3 20 20 N 1.34659 * 108.39596 * 0.26661 * 18 4 3 21 21 H 0.97003 * 124.85309 * 179.73916 * 20 18 4 22 22 H 1.09006 * 109.46846 * 89.99636 * 1 2 3 23 23 H 1.08998 * 109.47178 * 209.99800 * 1 2 3 24 24 H 1.08998 * 109.46787 * 330.00289 * 1 2 3 25 25 H 1.08003 * 126.83730 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47558 * 83.35757 * 8 7 5 27 27 H 1.09005 * 109.47211 * 203.36554 * 8 7 5 28 28 H 1.09010 * 109.46665 * 323.36214 * 8 7 5 29 29 H 1.09006 * 109.46736 * 210.00264 * 9 7 5 30 30 H 1.08993 * 109.47086 * 329.99918 * 9 7 5 31 31 H 0.97001 * 119.99955 * 180.02562 * 13 12 10 32 32 H 1.08992 * 109.46849 * 89.99881 * 19 18 4 33 33 H 1.09001 * 109.46476 * 330.00283 * 19 18 4 34 34 H 1.08994 * 109.47646 * 210.00408 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6104 0.0006 5 6 4.8978 1.4300 0.0014 6 8 5.9780 0.9100 0.2064 7 7 4.8206 2.7563 -0.2253 8 6 3.5172 3.3866 -0.4491 9 6 6.0401 3.5678 -0.2476 10 6 6.5864 3.6151 -1.6513 11 1 6.0764 3.0926 -2.4471 12 6 7.7378 4.3246 -1.9195 13 7 8.3590 4.9605 -0.9504 14 14 8.4152 4.3826 -3.6593 15 1 7.4037 4.9847 -4.5647 16 1 9.6513 5.2053 -3.6821 17 1 8.7290 3.0043 -4.1146 18 6 3.5998 -0.7552 0.0015 19 6 4.7721 -1.7021 0.0019 20 7 2.3007 -1.1099 -0.0044 21 1 1.9756 -2.0238 -0.0088 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9630 2.1234 -0.0004 26 1 3.0487 3.6034 0.5109 27 1 3.6528 4.3143 -1.0051 28 1 2.8801 2.7108 -1.0199 29 1 5.8096 4.5794 0.0868 30 1 6.7827 3.1260 0.4166 31 1 9.1689 5.4599 -1.1391 32 1 5.0549 -1.9297 1.0296 33 1 5.6138 -1.2383 -0.5124 34 1 4.4955 -2.6231 -0.5113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603616413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:19 Heat of formation + Delta-G solvation = -9.929445 kcal Electronic energy + Delta-G solvation = -16670.325302 eV Core-core repulsion = 13989.296428 eV Total energy + Delta-G solvation = -2681.028874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.27900 -39.96719 -36.58511 -34.77830 -33.45447 -32.22973 -30.03281 -29.49515 -27.72400 -25.87769 -24.71385 -22.36034 -21.40825 -19.26301 -18.66490 -17.87102 -16.96045 -16.66546 -16.30718 -16.05406 -15.41808 -14.87808 -14.40194 -14.24570 -14.05691 -14.00741 -13.62681 -13.54231 -13.32645 -13.05843 -12.91977 -12.85767 -12.60760 -12.35035 -12.25153 -11.96451 -11.71943 -10.63388 -10.55565 -9.71006 -9.39600 -8.84272 -8.20025 -6.36184 0.86154 1.36323 1.41391 1.48956 1.52442 2.21411 2.36940 2.61724 2.74637 3.07719 3.92999 3.98065 4.26163 4.29989 4.48220 4.55528 4.67040 4.70345 4.71907 4.90465 4.91833 4.98674 5.01792 5.12432 5.21711 5.23880 5.39840 5.59354 5.86052 5.91711 6.07486 6.09497 6.69979 6.73308 6.90831 7.29947 7.60577 8.86332 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.034160 B = 0.006273 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.466973 B = 4462.829796 C = 4742.531600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.021 3.979 3 C -0.201 4.201 4 C -0.260 4.260 5 C 0.564 3.436 6 O -0.605 6.605 7 N -0.607 5.607 8 C 0.072 3.928 9 C 0.260 3.740 10 C -0.544 4.544 11 H 0.049 0.951 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.971 3.029 15 H -0.260 1.260 16 H -0.275 1.275 17 H -0.278 1.278 18 C 0.092 3.908 19 C -0.085 4.085 20 N -0.533 5.533 21 H 0.431 0.569 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.173 0.827 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.023 0.977 30 H -0.003 1.003 31 H 0.268 0.732 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.031 -11.371 0.685 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.224 4.224 4 C -0.270 4.270 5 C 0.356 3.644 6 O -0.489 6.489 7 N -0.337 5.337 8 C -0.070 4.070 9 C 0.139 3.861 10 C -0.582 4.582 11 H 0.068 0.932 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.794 3.206 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.203 1.203 18 C -0.027 4.027 19 C -0.143 4.143 20 N -0.131 5.131 21 H 0.271 0.729 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.190 0.810 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.041 0.959 30 H 0.015 0.985 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.426 -11.583 0.830 21.780 hybrid contribution 1.003 0.091 -0.577 1.161 sum -17.422 -11.492 0.253 20.872 Atomic orbital electron populations 1.20447 0.84370 1.04789 1.03943 1.20874 0.95152 0.85109 1.07742 1.22725 0.89538 0.99980 1.10120 1.20283 0.93245 0.93334 1.20092 1.18086 0.88236 0.81964 0.76119 1.90639 1.31910 1.72758 1.53581 1.47913 1.09089 1.07515 1.69162 1.22480 0.83945 0.99025 1.01583 1.18761 0.82171 0.89161 0.96005 1.21659 1.10321 1.31471 0.94773 0.93238 1.25891 0.96461 0.94644 1.02149 1.70054 1.19271 1.33409 1.34119 0.85431 0.78083 0.78075 0.78972 1.18455 1.19959 1.20343 1.20317 0.86365 0.93702 1.02318 1.20428 0.93306 0.97048 1.03500 1.41433 1.03900 1.09771 1.58036 0.72939 0.89717 0.89832 0.88941 0.81003 0.91246 0.91783 0.88286 0.95911 0.98475 0.92322 0.90218 0.92119 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.41 71.24 0.74 -0.09 16 2 C 0.02 0.44 7.13 40.98 0.29 0.73 16 3 C -0.20 -5.62 8.72 23.62 0.21 -5.41 16 4 C -0.26 -9.77 6.06 -19.04 -0.12 -9.89 16 5 C 0.56 27.89 7.65 86.62 0.66 28.55 16 6 O -0.60 -34.86 14.58 -4.10 -0.06 -34.92 16 7 N -0.61 -29.74 2.86 -855.20 -2.44 -32.18 16 8 C 0.07 2.55 8.73 127.77 1.12 3.67 16 9 C 0.26 15.35 5.14 85.63 0.44 15.79 16 10 C -0.54 -33.51 9.39 25.60 0.24 -33.26 16 11 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 12 C 0.01 0.44 5.46 84.65 0.46 0.90 16 13 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 14 Si 0.97 46.69 29.54 68.60 2.03 48.71 16 15 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 18 C 0.09 2.79 7.17 41.78 0.30 3.09 16 19 C -0.09 -2.42 9.78 71.24 0.70 -1.72 16 20 N -0.53 -10.99 5.90 -171.07 -1.01 -12.00 16 21 H 0.43 5.18 8.96 -92.71 -0.83 4.35 16 22 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 23 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.17 4.17 4.86 -2.91 -0.01 4.16 16 26 H 0.07 2.08 7.64 -2.39 -0.02 2.07 16 27 H 0.06 2.31 8.02 -2.38 -0.02 2.29 16 28 H 0.10 3.07 4.84 -2.38 -0.01 3.06 16 29 H 0.02 1.35 8.07 -2.38 -0.02 1.33 16 30 H 0.00 -0.19 7.40 -2.39 -0.02 -0.21 16 31 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 2.24 6.76 -2.39 -0.02 2.22 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -82.54 286.51 4.12 -78.41 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.28 Total: 7.75 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.04 Total: 2.35 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -3.17 Total: -102.32 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.06 Total: -34.92 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -82.54 4.12 -78.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603616413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.485 kcal (2) G-P(sol) polarization free energy of solvation -82.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds