Wall clock time and date at job start Sun Mar 29 2020 21:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46974 * 281.37595 * 3 2 1 5 5 C 1.50700 * 109.47442 * 300.00238 * 4 3 2 6 6 O 1.21213 * 119.99758 * 239.99972 * 5 4 3 7 7 O 1.34307 * 119.99699 * 60.27712 * 5 4 3 8 8 C 1.34923 * 117.00000 * 179.72351 * 7 5 4 9 9 H 1.08007 * 119.99533 * 0.02562 * 8 7 5 10 10 C 1.38749 * 120.00389 * 179.97438 * 8 7 5 11 11 N 1.31438 * 119.99878 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00141 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46919 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.46750 * 120.00372 * 12 10 8 15 15 H 1.48497 * 109.46768 * 240.00292 * 12 10 8 16 16 C 1.52998 * 109.47216 * 60.00454 * 4 3 2 17 17 C 1.53004 * 109.47453 * 179.97438 * 16 4 3 18 18 C 1.52996 * 109.47230 * 300.00110 * 17 16 4 19 19 C 1.52998 * 109.46992 * 59.99608 * 18 17 16 20 20 C 1.53004 * 109.46899 * 180.02562 * 4 3 2 21 21 H 4.44647 * 5.63424 * 179.97438 * 4 1 2 22 22 H 1.08995 * 109.46541 * 161.37918 * 3 2 1 23 23 H 1.08996 * 109.47117 * 41.38133 * 3 2 1 24 24 H 0.96996 * 120.00334 * 179.97438 * 11 10 8 25 25 H 1.09004 * 109.47239 * 299.99688 * 16 4 3 26 26 H 1.09005 * 109.47323 * 59.99908 * 16 4 3 27 27 H 1.09000 * 109.47070 * 179.97438 * 17 16 4 28 28 H 1.09005 * 109.46605 * 59.99868 * 17 16 4 29 29 H 1.09005 * 109.47125 * 299.99994 * 18 17 16 30 30 H 1.08998 * 109.47408 * 179.97438 * 18 17 16 31 31 H 1.09004 * 109.47239 * 180.02562 * 19 18 17 32 32 H 1.08996 * 109.47462 * 60.00191 * 19 18 17 33 33 H 1.08996 * 109.47100 * 299.99920 * 20 4 3 34 34 H 1.09000 * 109.46887 * 60.00679 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.2836 1.4141 5 6 2.6532 0.7822 2.3534 6 8 3.4406 1.4739 2.9624 7 8 1.3327 0.9620 2.5198 8 6 0.9496 1.9290 3.3791 9 1 1.6933 2.5174 3.8962 10 6 -0.3994 2.1684 3.5978 11 7 -1.3043 1.4527 2.9681 12 14 -0.9297 3.5078 4.7871 13 1 0.2723 4.1638 5.3616 14 1 -1.7459 4.5162 4.0647 15 1 -1.7369 2.9082 5.8798 16 6 2.6468 -1.6509 1.8748 17 6 3.1574 -1.9355 3.2887 18 6 4.6873 -1.9349 3.2882 19 6 5.1966 -0.5677 2.8276 20 6 4.6861 -0.2823 1.4142 21 1 -1.0500 0.0002 0.0002 22 1 3.0088 0.9747 -0.3281 23 1 3.0097 -0.7702 -0.6793 24 1 -2.2475 1.6197 3.1212 25 1 1.5567 -1.6514 1.8748 26 1 3.0105 -2.4219 1.1955 27 1 2.7941 -2.9093 3.6170 28 1 2.7940 -1.1645 3.9683 29 1 5.0508 -2.7058 2.6086 30 1 5.0511 -2.1372 4.2956 31 1 6.2867 -0.5674 2.8268 32 1 4.8333 0.2032 3.5071 33 1 5.0501 -1.0530 0.7349 34 1 5.0486 0.6920 1.0863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788213518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:58 Heat of formation + Delta-G solvation = -46.192361 kcal Electronic energy + Delta-G solvation = -17604.134893 eV Core-core repulsion = 14889.240790 eV Total energy + Delta-G solvation = -2714.894103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00366 -37.30324 -34.85103 -33.88866 -32.00690 -30.72766 -30.21618 -26.29435 -25.47353 -22.63671 -22.26385 -20.55502 -18.63972 -17.56334 -17.20581 -15.90602 -15.36987 -14.51895 -14.36746 -14.32334 -13.80137 -13.40530 -13.26741 -12.92353 -12.33625 -11.94414 -11.80523 -11.71670 -11.47969 -11.20600 -11.17080 -10.70231 -10.45737 -10.37154 -9.98833 -9.94815 -9.77389 -9.62860 -9.21243 -9.09148 -8.60910 -8.45164 -6.31573 -3.96914 3.13753 3.22925 3.29625 3.56173 3.80901 3.85014 4.01536 4.60851 4.97050 5.12579 5.25680 5.30173 5.35825 5.56444 5.67571 5.75792 5.85152 5.92870 5.99671 6.05811 6.15830 6.18955 6.25277 6.40848 6.54022 6.67270 6.69863 6.77401 6.89621 6.92921 7.11638 7.50396 8.06650 8.63753 8.86113 9.18301 10.02673 10.85936 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.026657 B = 0.009568 C = 0.008220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.143872 B = 2925.573896 C = 3405.417537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.211 4.211 3 C 0.010 3.990 4 C -0.037 4.037 5 C 0.410 3.590 6 O -0.556 6.556 7 O -0.196 6.196 8 C -0.381 4.381 9 H 0.091 0.909 10 C 0.045 3.955 11 N -0.859 5.859 12 Si 0.934 3.066 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.278 1.278 16 C -0.102 4.102 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.134 4.134 20 C -0.091 4.091 21 H 0.208 0.792 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.265 0.735 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 -6.253 -3.971 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.211 4.211 3 C -0.026 4.026 4 C -0.038 4.038 5 C 0.256 3.744 6 O -0.454 6.454 7 O -0.102 6.102 8 C -0.457 4.457 9 H 0.108 0.892 10 C -0.159 4.159 11 N -0.496 5.496 12 Si 0.760 3.240 13 H -0.192 1.192 14 H -0.204 1.204 15 H -0.204 1.204 16 C -0.140 4.140 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.171 4.171 20 C -0.129 4.129 21 H 0.225 0.775 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.624 -6.087 -3.823 9.775 hybrid contribution -0.554 0.744 0.651 1.134 sum 6.070 -5.343 -3.172 8.686 Atomic orbital electron populations 1.24581 0.95490 0.99135 0.97854 1.22333 0.93832 1.02100 1.02799 1.18567 0.86396 1.02349 0.95332 1.20377 0.95749 0.94409 0.93273 1.22883 0.82910 0.84972 0.83597 1.90458 1.56958 1.48550 1.49436 1.83985 1.21501 1.49779 1.54969 1.21233 0.91980 1.12103 1.20413 0.89172 1.25201 0.94617 0.98210 0.97887 1.69998 1.00810 1.38434 1.40331 0.85740 0.78886 0.79912 0.79481 1.19165 1.20390 1.20378 1.21557 1.01980 0.94071 0.96371 1.21558 0.95467 1.01577 0.97442 1.21526 0.95827 0.97502 1.00420 1.21798 0.99172 0.98317 0.97856 1.21345 0.92142 1.01599 0.97773 0.77456 0.90163 0.89810 0.92564 0.90268 0.91784 0.92228 0.91469 0.92718 0.92615 0.92873 0.88545 0.91809 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 18.91 29.55 0.56 -2.63 16 2 C -0.21 -4.29 10.15 -37.12 -0.38 -4.67 16 3 C 0.01 0.18 4.78 -29.52 -0.14 0.04 16 4 C -0.04 -0.69 0.52 -155.66 -0.08 -0.77 16 5 C 0.41 10.08 4.94 36.01 0.18 10.26 16 6 O -0.56 -14.73 12.90 -19.05 -0.25 -14.98 16 7 O -0.20 -5.50 7.55 -20.70 -0.16 -5.66 16 8 C -0.38 -11.24 9.65 30.92 0.30 -10.95 16 9 H 0.09 2.73 6.86 -52.48 -0.36 2.37 16 10 C 0.04 1.25 5.49 -17.53 -0.10 1.16 16 11 N -0.86 -24.39 13.67 55.48 0.76 -23.63 16 12 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 C -0.10 -1.79 4.42 -26.73 -0.12 -1.91 16 17 C -0.12 -2.10 5.70 -26.73 -0.15 -2.25 16 18 C -0.12 -1.71 5.92 -26.73 -0.16 -1.87 16 19 C -0.13 -2.20 5.63 -26.75 -0.15 -2.35 16 20 C -0.09 -1.46 4.37 -26.75 -0.12 -1.58 16 21 H 0.21 3.97 7.80 -54.09 -0.42 3.55 16 22 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.08 1.58 7.19 -51.93 -0.37 1.21 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.39 7.22 -51.93 -0.37 1.01 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.94 5.51 -51.93 -0.29 1.66 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 281.58 15.07 4.24 4.24 Total: -1.00 -31.79 281.58 -5.53 -37.33 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.75 Total: 3.68 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -0.36 Total: -17.52 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.76 Total: -23.63 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.40 Total: -20.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.79 -5.53 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788213518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.865 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds