Wall clock time and date at job start Sun Mar 29 2020 21:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47288 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47287 * 119.99768 * 3 2 1 6 6 H 1.48508 * 109.46787 * 239.99677 * 3 2 1 7 7 C 1.38814 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00491 * 207.60069 * 7 2 1 9 9 N 1.36939 * 119.99730 * 27.60238 * 7 2 1 10 10 C 1.46502 * 119.99759 * 34.85685 * 9 7 2 11 11 N 1.46498 * 109.46944 * 90.00298 * 10 9 7 12 12 C 1.46182 * 123.95210 * 269.72636 * 11 10 9 13 13 C 1.53732 * 107.15853 * 179.82506 * 12 11 10 14 14 H 1.08996 * 117.90133 * 139.45410 * 13 12 11 15 15 C 1.53027 * 118.65635 * 297.52858 * 13 12 11 16 16 C 1.52983 * 60.37669 * 90.16084 * 15 13 12 17 17 H 1.09005 * 119.08566 * 112.60608 * 16 15 13 18 18 C 1.33824 * 123.95028 * 90.01865 * 11 10 9 19 19 O 1.21275 * 124.57642 * 359.88221 * 18 11 10 20 20 C 1.46492 * 119.99820 * 214.86276 * 9 7 2 21 21 C 1.52998 * 117.50348 * 8.38473 * 20 9 7 22 22 C 1.53003 * 117.49868 * 299.72594 * 20 9 7 23 23 H 0.96996 * 120.00141 * 185.42020 * 1 2 3 24 24 H 1.09004 * 109.46669 * 209.99483 * 10 9 7 25 25 H 1.08991 * 109.47638 * 330.00039 * 10 9 7 26 26 H 1.09003 * 109.89441 * 299.33517 * 12 11 10 27 27 H 1.08997 * 109.90267 * 60.56867 * 12 11 10 28 28 H 1.08997 * 117.45986 * 342.56540 * 15 13 12 29 29 H 1.08996 * 117.45603 * 197.76020 * 15 13 12 30 30 H 1.09000 * 115.55260 * 154.06027 * 20 9 7 31 31 H 1.09004 * 117.49920 * 0.02562 * 21 20 9 32 32 H 1.08998 * 117.50105 * 145.01931 * 21 20 9 33 33 H 1.09003 * 117.50260 * 214.98662 * 22 20 9 34 34 H 1.08998 * 117.49748 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9981 -1.2553 0.4339 9 7 1.4424 -2.3208 -0.5485 10 6 0.5794 -2.2013 -1.7262 11 7 1.3912 -2.3166 -2.9402 12 6 2.0071 -1.1793 -3.6215 13 6 2.7665 -1.7356 -4.8369 14 1 2.7160 -1.1750 -5.7702 15 6 3.9267 -2.7041 -4.5968 16 6 2.5096 -3.2516 -4.7771 17 1 2.2775 -3.8390 -5.6656 18 6 1.6511 -3.4747 -3.5584 19 8 1.2498 -4.5576 -3.1882 20 6 1.6979 -3.6369 0.0420 21 6 2.4417 -3.6793 1.3784 22 6 3.1494 -4.1181 0.0940 23 1 -0.4850 -0.8362 0.0793 24 1 -0.1671 -2.9956 -1.7116 25 1 0.0797 -1.2328 -1.7138 26 1 1.2364 -0.4821 -3.9504 27 1 2.7031 -0.6768 -2.9497 28 1 4.3547 -2.7373 -3.5949 29 1 4.6319 -2.8559 -5.4140 30 1 0.9250 -4.3865 -0.1278 31 1 2.7405 -2.7280 1.8186 32 1 2.1582 -4.4570 2.0877 33 1 3.3314 -5.1843 -0.0413 34 1 3.9141 -3.4556 -0.3115 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902076644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:56 Heat of formation + Delta-G solvation = 52.991903 kcal Electronic energy + Delta-G solvation = -17561.374293 eV Core-core repulsion = 14883.073893 eV Total energy + Delta-G solvation = -2678.300400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37734 -37.18528 -36.40228 -34.41592 -32.84764 -30.06242 -27.09589 -25.94863 -23.89517 -22.35640 -21.43561 -20.73917 -19.99465 -18.81547 -17.14889 -16.44143 -15.46357 -15.32933 -14.86798 -14.10582 -13.71173 -13.70661 -13.52682 -12.95454 -12.70272 -12.17611 -11.95176 -11.73126 -11.34539 -11.04132 -10.70316 -10.66218 -10.26881 -10.19333 -10.10519 -9.94584 -9.59323 -9.43556 -9.08760 -8.46964 -8.04430 -7.01027 -6.26897 -3.55912 2.96631 3.36242 3.39611 3.58335 3.72713 3.96995 4.41224 4.67112 4.76550 4.87567 5.01413 5.06330 5.12533 5.30951 5.58817 5.77574 5.86495 5.92471 6.03004 6.07642 6.11095 6.16325 6.24091 6.34648 6.43894 6.55105 6.63945 6.90401 7.07663 7.33985 7.85617 8.03463 8.36325 8.86190 8.92566 9.59686 10.04367 10.93543 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.011888 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.884767 B = 2354.739322 C = 3073.120876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.012 4.012 3 Si 1.059 2.941 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.355 4.355 8 H 0.056 0.944 9 N -0.551 5.551 10 C 0.352 3.648 11 N -0.601 5.601 12 C 0.129 3.871 13 C -0.164 4.164 14 H 0.128 0.872 15 C -0.123 4.123 16 C -0.208 4.208 17 H 0.128 0.872 18 C 0.537 3.463 19 O -0.548 6.548 20 C 0.124 3.876 21 C -0.190 4.190 22 C -0.215 4.215 23 H 0.270 0.730 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 -1.466 -7.685 9.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.216 4.216 3 Si 0.887 3.113 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.484 4.484 8 H 0.073 0.927 9 N -0.269 5.269 10 C 0.145 3.855 11 N -0.338 5.338 12 C 0.004 3.996 13 C -0.183 4.183 14 H 0.145 0.855 15 C -0.160 4.160 16 C -0.229 4.229 17 H 0.146 0.854 18 C 0.323 3.677 19 O -0.427 6.427 20 C 0.015 3.985 21 C -0.228 4.228 22 C -0.255 4.255 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.475 -0.303 -7.411 8.662 hybrid contribution 0.460 -1.705 0.027 1.766 sum 4.936 -2.008 -7.383 9.105 Atomic orbital electron populations 1.70821 1.06795 1.30377 1.45656 1.25959 0.96259 1.01677 0.97660 0.83624 0.75064 0.75959 0.76622 1.20868 1.21697 1.21639 1.19800 0.99547 0.88684 1.40352 0.92666 1.44077 1.55689 1.01660 1.25467 1.21219 0.87494 1.02311 0.74468 1.49731 1.50625 1.06300 1.27122 1.21242 0.96539 0.89686 0.92095 1.23435 1.02271 0.91780 1.00807 0.85460 1.22815 0.89521 0.99869 1.03804 1.23160 0.99977 0.98664 1.01126 0.85373 1.19605 0.80314 0.84479 0.83311 1.90624 1.56084 1.26505 1.69455 1.21162 0.91939 0.89311 0.96073 1.23083 1.06416 1.02249 0.91090 1.23235 0.99905 0.99292 1.03114 0.91842 0.92107 0.87718 0.90865 0.89891 0.88409 0.87409 0.89351 0.88230 0.90585 0.90811 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 12.20 55.49 0.68 -24.04 16 2 C -0.01 -0.31 4.81 -17.43 -0.08 -0.39 16 3 Si 1.06 23.36 30.00 -169.99 -5.10 18.26 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.35 -9.20 8.22 -15.06 -0.12 -9.32 16 8 H 0.06 1.49 7.08 -52.49 -0.37 1.12 16 9 N -0.55 -13.43 2.82 -169.35 -0.48 -13.91 16 10 C 0.35 8.11 5.63 -63.75 -0.36 7.75 16 11 N -0.60 -12.35 3.13 -177.47 -0.56 -12.91 16 12 C 0.13 2.24 7.17 -3.83 -0.03 2.21 16 13 C -0.16 -2.25 7.18 -89.77 -0.64 -2.90 16 14 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.12 -1.65 10.11 -26.73 -0.27 -1.92 16 16 C -0.21 -3.25 6.96 -91.31 -0.64 -3.88 16 17 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16 18 C 0.54 11.02 7.83 -11.39 -0.09 10.93 16 19 O -0.55 -13.04 17.51 5.56 0.10 -12.94 16 20 C 0.12 2.82 6.59 -67.93 -0.45 2.37 16 21 C -0.19 -3.97 9.77 -26.70 -0.26 -4.23 16 22 C -0.21 -4.51 10.27 -26.69 -0.27 -4.78 16 23 H 0.27 7.58 7.23 -40.82 -0.30 7.28 16 24 H 0.06 1.42 7.79 -51.93 -0.40 1.01 16 25 H 0.11 2.57 5.38 -51.93 -0.28 2.29 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 2.01 8.12 -51.93 -0.42 1.59 16 31 H 0.10 2.25 6.67 -51.93 -0.35 1.90 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 287.08 15.07 4.33 4.33 Total: -1.00 -29.38 287.08 -8.97 -38.35 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.72 Total: 7.03 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.22 Total: -4.16 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.36 Total: -50.86 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.10 Total: -12.94 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.10 Total: 18.26 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.38 -8.97 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902076644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.339 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds