Wall clock time and date at job start Sun Mar 29 2020 21:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47288 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47287 * 119.99768 * 3 2 1 6 6 H 1.48508 * 109.46787 * 239.99677 * 3 2 1 7 7 C 1.38814 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00491 * 207.60069 * 7 2 1 9 9 N 1.36939 * 119.99730 * 27.60238 * 7 2 1 10 10 C 1.46502 * 119.99759 * 34.85685 * 9 7 2 11 11 N 1.46498 * 109.46944 * 90.00298 * 10 9 7 12 12 C 1.46182 * 123.95210 * 269.72636 * 11 10 9 13 13 C 1.53732 * 107.15853 * 179.82506 * 12 11 10 14 14 H 1.08996 * 117.90133 * 139.45410 * 13 12 11 15 15 C 1.53027 * 118.65635 * 297.52858 * 13 12 11 16 16 C 1.52983 * 60.37669 * 90.16084 * 15 13 12 17 17 H 1.09005 * 119.08566 * 112.60608 * 16 15 13 18 18 C 1.33824 * 123.95028 * 90.01865 * 11 10 9 19 19 O 1.21275 * 124.57642 * 359.88221 * 18 11 10 20 20 C 1.46492 * 119.99820 * 214.86276 * 9 7 2 21 21 C 1.52998 * 117.50348 * 8.38473 * 20 9 7 22 22 C 1.53003 * 117.49868 * 299.72594 * 20 9 7 23 23 H 0.96996 * 120.00141 * 185.42020 * 1 2 3 24 24 H 1.09004 * 109.46669 * 209.99483 * 10 9 7 25 25 H 1.08991 * 109.47638 * 330.00039 * 10 9 7 26 26 H 1.09003 * 109.89441 * 299.33517 * 12 11 10 27 27 H 1.08997 * 109.90267 * 60.56867 * 12 11 10 28 28 H 1.08997 * 117.45986 * 342.56540 * 15 13 12 29 29 H 1.08996 * 117.45603 * 197.76020 * 15 13 12 30 30 H 1.09000 * 115.55260 * 154.06027 * 20 9 7 31 31 H 1.09004 * 117.49920 * 0.02562 * 21 20 9 32 32 H 1.08998 * 117.50105 * 145.01931 * 21 20 9 33 33 H 1.09003 * 117.50260 * 214.98662 * 22 20 9 34 34 H 1.08998 * 117.49748 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9981 -1.2553 0.4339 9 7 1.4424 -2.3208 -0.5485 10 6 0.5794 -2.2013 -1.7262 11 7 1.3912 -2.3166 -2.9402 12 6 2.0071 -1.1793 -3.6215 13 6 2.7665 -1.7356 -4.8369 14 1 2.7160 -1.1750 -5.7702 15 6 3.9267 -2.7041 -4.5968 16 6 2.5096 -3.2516 -4.7771 17 1 2.2775 -3.8390 -5.6656 18 6 1.6511 -3.4747 -3.5584 19 8 1.2498 -4.5576 -3.1882 20 6 1.6979 -3.6369 0.0420 21 6 2.4417 -3.6793 1.3784 22 6 3.1494 -4.1181 0.0940 23 1 -0.4850 -0.8362 0.0793 24 1 -0.1671 -2.9956 -1.7116 25 1 0.0797 -1.2328 -1.7138 26 1 1.2364 -0.4821 -3.9504 27 1 2.7031 -0.6768 -2.9497 28 1 4.3547 -2.7373 -3.5949 29 1 4.6319 -2.8559 -5.4140 30 1 0.9250 -4.3865 -0.1278 31 1 2.7405 -2.7280 1.8186 32 1 2.1582 -4.4570 2.0877 33 1 3.3314 -5.1843 -0.0413 34 1 3.9141 -3.4556 -0.3115 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902076644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:56 Heat of formation + Delta-G solvation = 36.342256 kcal Electronic energy + Delta-G solvation = -17562.096276 eV Core-core repulsion = 14883.073893 eV Total energy + Delta-G solvation = -2679.022383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.83374 -38.97648 -37.97309 -36.13963 -34.59121 -31.92364 -28.59879 -27.68867 -25.67356 -23.82307 -23.16707 -22.08446 -21.76864 -20.34485 -19.03463 -18.04440 -17.20138 -16.82093 -16.48628 -15.82591 -15.47912 -15.18755 -15.11888 -14.64518 -14.21158 -13.81515 -13.60279 -13.46954 -12.93471 -12.55748 -12.43252 -12.36468 -11.94038 -11.79251 -11.54535 -11.44231 -11.37556 -11.18806 -10.62836 -10.42473 -9.70630 -8.97439 -8.30844 -5.61249 1.47533 1.59544 1.62412 1.84148 2.19115 2.58389 2.68530 3.02720 3.19996 3.38534 3.41477 3.59167 3.84556 3.90129 4.07689 4.25368 4.31851 4.36132 4.46412 4.67456 4.71596 4.73567 4.78791 4.84079 4.85218 4.95285 5.10148 5.19174 5.33144 5.66868 5.83823 6.27185 6.39886 6.92461 7.26252 7.61541 8.06998 8.85261 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.011888 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.884767 B = 2354.739322 C = 3073.120876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.050 4.050 3 Si 1.104 2.896 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.353 4.353 8 H 0.042 0.958 9 N -0.564 5.564 10 C 0.362 3.638 11 N -0.609 5.609 12 C 0.119 3.881 13 C -0.139 4.139 14 H 0.173 0.827 15 C -0.107 4.107 16 C -0.219 4.219 17 H 0.154 0.846 18 C 0.522 3.478 19 O -0.591 6.591 20 C 0.095 3.905 21 C -0.176 4.176 22 C -0.198 4.198 23 H 0.255 0.745 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -0.994 -9.457 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.249 4.249 3 Si 0.928 3.072 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.482 4.482 8 H 0.060 0.940 9 N -0.284 5.284 10 C 0.155 3.845 11 N -0.344 5.344 12 C -0.004 4.004 13 C -0.157 4.157 14 H 0.191 0.809 15 C -0.144 4.144 16 C -0.240 4.240 17 H 0.171 0.829 18 C 0.310 3.690 19 O -0.473 6.473 20 C -0.013 4.013 21 C -0.214 4.214 22 C -0.238 4.238 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.171 0.829 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.394 0.162 -9.210 11.213 hybrid contribution -0.147 -1.916 0.616 2.018 sum 6.246 -1.754 -8.594 10.768 Atomic orbital electron populations 1.70937 1.07608 1.29397 1.47910 1.27151 0.96213 1.04448 0.97066 0.83028 0.74210 0.72281 0.77705 1.21465 1.20836 1.19402 1.19793 0.98740 0.89454 1.40237 0.94034 1.44142 1.56089 1.01858 1.26298 1.20808 0.87512 1.00677 0.75544 1.49568 1.50417 1.07842 1.26552 1.21420 0.96886 0.88933 0.93191 1.23579 1.01374 0.90393 1.00377 0.80928 1.23018 0.89016 0.98143 1.04213 1.23088 1.01027 1.00657 0.99241 0.82874 1.20492 0.80360 0.83550 0.84584 1.90583 1.57799 1.27935 1.71020 1.21302 0.92984 0.88933 0.98033 1.23065 1.05134 1.02220 0.90961 1.23146 0.97992 1.00023 1.02633 0.93461 0.93575 0.89367 0.89758 0.91942 0.90870 0.82860 0.89893 0.90049 0.87702 0.88818 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 12.20 21.65 0.26 -51.55 16 2 C -0.05 -2.62 4.81 84.86 0.41 -2.21 16 3 Si 1.10 46.96 30.00 68.60 2.06 49.02 16 4 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.35 -18.67 8.22 84.03 0.69 -17.98 16 8 H 0.04 2.29 7.08 -2.91 -0.02 2.27 16 9 N -0.56 -28.37 2.82 -689.71 -1.95 -30.32 16 10 C 0.36 17.39 5.63 170.96 0.96 18.36 16 11 N -0.61 -25.26 3.13 -834.31 -2.61 -27.88 16 12 C 0.12 3.99 7.17 86.69 0.62 4.61 16 13 C -0.14 -3.28 7.18 -10.24 -0.07 -3.36 16 14 H 0.17 2.62 8.14 -2.39 -0.02 2.60 16 15 C -0.11 -2.45 10.11 30.60 0.31 -2.14 16 16 C -0.22 -6.23 6.96 -11.24 -0.08 -6.31 16 17 H 0.15 3.63 8.14 -2.38 -0.02 3.61 16 18 C 0.52 21.34 7.83 87.82 0.69 22.03 16 19 O -0.59 -28.70 17.51 -3.01 -0.05 -28.76 16 20 C 0.10 4.44 6.59 44.99 0.30 4.74 16 21 C -0.18 -7.28 9.77 30.62 0.30 -6.99 16 22 C -0.20 -8.23 10.27 30.62 0.31 -7.91 16 23 H 0.26 14.90 7.23 -92.71 -0.67 14.23 16 24 H 0.05 2.29 7.79 -2.39 -0.02 2.27 16 25 H 0.09 4.53 5.38 -2.39 -0.01 4.52 16 26 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.15 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 3.90 8.12 -2.39 -0.02 3.89 16 31 H 0.08 3.69 6.67 -2.39 -0.02 3.68 16 32 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -65.95 287.08 3.34 -62.61 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 1.19 Total: 24.04 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 4.44 Total: 2.83 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -4.30 Total: -109.75 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.06 Total: 49.02 kcal Total: -65.95 3.34 -62.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902076644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.953 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds