Wall clock time and date at job start Sun Mar 29 2020 21:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00087 * 2 1 4 4 H 1.48502 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47515 * 300.00868 * 3 2 1 6 6 H 1.48502 * 109.46915 * 60.00554 * 3 2 1 7 7 C 1.37881 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00330 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47513 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00186 * 179.97438 * 10 9 7 12 12 O 1.21611 * 120.00083 * 359.97438 * 11 10 9 13 13 C 1.47101 * 119.99769 * 179.97438 * 11 10 9 14 14 C 1.33001 * 119.99617 * 187.41385 * 13 11 10 15 15 C 1.50697 * 120.00105 * 16.02441 * 14 13 11 16 16 N 1.46503 * 109.46675 * 129.18173 * 15 14 13 17 17 C 1.34434 * 126.82247 * 125.00381 * 16 15 14 18 18 N 1.30827 * 108.07891 * 179.97438 * 17 16 15 19 19 C 1.33239 * 109.82964 * 0.02562 * 18 17 16 20 20 N 1.30714 * 108.94916 * 359.97438 * 19 18 17 21 21 H 0.96998 * 120.00002 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47536 * 59.99659 * 9 7 2 23 23 H 1.09004 * 109.47081 * 299.99928 * 9 7 2 24 24 H 0.96999 * 119.99712 * 359.97438 * 10 9 7 25 25 H 1.08000 * 120.00263 * 7.41746 * 13 11 10 26 26 H 1.07999 * 119.99471 * 196.02613 * 14 13 11 27 27 H 1.08998 * 109.47255 * 9.18791 * 15 14 13 28 28 H 1.08994 * 109.47518 * 249.18144 * 15 14 13 29 29 H 1.08003 * 125.95933 * 359.69517 * 17 16 15 30 30 H 1.07996 * 125.52749 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5582 -5.1056 0.0009 13 6 2.7098 -6.0014 -0.0006 14 6 2.2737 -7.2491 -0.1487 15 6 0.8829 -7.5043 -0.6700 16 7 0.9448 -8.4602 -1.7785 17 6 0.2742 -9.6208 -1.8799 18 7 0.6013 -10.1808 -3.0161 19 6 1.4748 -9.4113 -3.6643 20 7 1.7163 -8.3459 -2.9465 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 3.1568 -3.4354 -0.0009 25 1 3.7658 -5.8091 0.1193 26 1 2.9162 -8.0794 0.1047 27 1 0.4491 -6.5681 -1.0213 28 1 0.2649 -7.9139 0.1289 29 1 -0.4113 -10.0232 -1.1487 30 1 1.9124 -9.6320 -4.6267 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119569288.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:10 Heat of formation + Delta-G solvation = 77.135707 kcal Electronic energy + Delta-G solvation = -15514.860108 eV Core-core repulsion = 12734.066318 eV Total energy + Delta-G solvation = -2780.793789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.01964 -39.25598 -35.39713 -34.17954 -32.51106 -32.10991 -31.19453 -27.95414 -26.50221 -23.46353 -22.01886 -21.93463 -21.02830 -19.40944 -17.61157 -16.82132 -16.07543 -15.71486 -15.14943 -14.89984 -14.65034 -14.26382 -14.12466 -13.71234 -12.91436 -12.79678 -12.56129 -12.04429 -11.96191 -11.51768 -11.00345 -10.95530 -10.38179 -10.07851 -9.90244 -9.78743 -9.46496 -9.42372 -8.99040 -8.78747 -7.97413 -6.22614 -4.29808 1.26280 1.67996 2.46967 2.95251 3.20257 3.27616 3.30525 3.68869 4.00533 4.28248 4.32176 4.53367 4.81347 4.87818 5.14064 5.16947 5.40285 5.42874 5.77409 6.12772 6.17075 6.43058 6.44619 6.79266 7.21197 7.29385 7.42116 7.58855 7.89436 8.06863 8.48989 8.67428 8.93614 9.36910 10.87626 Molecular weight = 236.10amu Principal moments of inertia in cm(-1) A = 0.052509 B = 0.004103 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.117330 B = 6821.967482 C = 6872.288379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.699 5.699 11 C 0.523 3.477 12 O -0.556 6.556 13 C -0.172 4.172 14 C -0.101 4.101 15 C 0.128 3.872 16 N -0.367 5.367 17 C 0.247 3.753 18 N -0.554 5.554 19 C 0.187 3.813 20 N -0.312 5.312 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.030 0.970 24 H 0.394 0.606 25 H 0.133 0.867 26 H 0.124 0.876 27 H 0.145 0.855 28 H 0.111 0.889 29 H 0.217 0.783 30 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -15.493 -0.631 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.126 3.874 10 N -0.345 5.345 11 C 0.310 3.690 12 O -0.440 6.440 13 C -0.194 4.194 14 C -0.122 4.122 15 C 0.008 3.992 16 N -0.158 5.158 17 C -0.050 4.050 18 N -0.282 5.282 19 C -0.115 4.115 20 N -0.141 5.141 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.227 0.773 25 H 0.151 0.849 26 H 0.141 0.859 27 H 0.162 0.838 28 H 0.129 0.871 29 H 0.233 0.767 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.835 -15.117 -0.887 15.621 hybrid contribution 0.871 0.991 0.291 1.351 sum 4.705 -14.126 -0.596 14.901 Atomic orbital electron populations 1.69978 1.06126 1.27301 1.48833 1.24952 0.94928 0.99522 0.94578 0.86346 0.79837 0.82850 0.77801 1.19601 1.20745 1.20750 1.21253 0.93347 0.90392 1.53355 0.91774 1.19183 0.88321 0.81965 0.97938 1.46452 1.11442 1.06165 1.70398 1.18596 0.88329 0.83912 0.78136 1.90578 1.16822 1.84346 1.52225 1.22951 0.99965 0.93264 1.03224 1.23397 0.96638 0.96913 0.95222 1.21804 0.96638 0.94642 0.86086 1.50816 1.31936 1.17405 1.15633 1.26070 0.97188 0.84922 0.96825 1.70503 1.18468 1.32643 1.06580 1.25983 0.95869 0.88876 1.00810 1.78110 1.17290 1.23401 0.95272 0.92434 0.95272 0.95229 0.77334 0.84942 0.85856 0.83802 0.87094 0.76659 0.76958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.55 -14.52 9.28 -34.44 -0.32 -14.83 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.34 5.43 -5.20 -0.03 6.31 16 10 N -0.70 -14.14 5.54 -62.68 -0.35 -14.48 16 11 C 0.52 9.76 7.54 -12.66 -0.10 9.67 16 12 O -0.56 -11.93 13.35 5.27 0.07 -11.85 16 13 C -0.17 -2.35 10.00 -37.80 -0.38 -2.72 16 14 C -0.10 -1.23 9.76 -36.13 -0.35 -1.58 16 15 C 0.13 1.64 6.11 -5.19 -0.03 1.61 16 16 N -0.37 -4.81 3.68 -63.81 -0.23 -5.04 16 17 C 0.25 2.74 12.63 -90.65 -1.14 1.60 16 18 N -0.55 -7.17 11.19 -15.83 -0.18 -7.34 16 19 C 0.19 2.37 13.03 -91.81 -1.20 1.17 16 20 N -0.31 -4.61 12.56 29.29 0.37 -4.24 16 21 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.39 6.83 8.30 -40.82 -0.34 6.49 16 25 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 26 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.15 2.40 4.99 -52.06 -0.26 2.14 16 28 H 0.11 1.10 8.09 -51.93 -0.42 0.68 16 29 H 0.22 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.21 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 275.50 15.07 4.15 4.15 Total: -1.00 -33.21 275.50 -7.19 -40.39 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.09 Total: 4.93 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -3.64 Total: 2.88 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.34 Total: -56.04 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.21 -7.19 -40.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119569288.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.528 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds