Wall clock time and date at job start Sun Mar 29 2020 21:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47203 * 270.00502 * 3 2 1 5 5 H 1.48499 * 109.46594 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.47048 * 150.00124 * 3 2 1 7 7 C 1.37881 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00339 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99659 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47424 * 60.00151 * 9 7 2 11 11 O 1.45196 * 109.47038 * 180.02562 * 9 7 2 12 12 C 1.34802 * 117.00308 * 210.00020 * 11 9 7 13 13 O 1.21530 * 119.99731 * 359.97438 * 12 11 9 14 14 C 1.46947 * 120.00151 * 180.02562 * 12 11 9 15 15 C 1.32707 * 124.62679 * 180.02562 * 14 12 11 16 16 C 1.51117 * 110.74520 * 179.73244 * 15 14 12 17 17 C 1.54580 * 104.84100 * 16.87259 * 16 15 14 18 18 C 1.51113 * 124.63268 * 0.20055 * 14 12 11 19 19 C 1.52998 * 109.47399 * 300.00126 * 9 7 2 20 20 C 1.53001 * 117.50231 * 248.75186 * 19 9 7 21 21 C 1.52995 * 117.50207 * 180.08567 * 19 9 7 22 22 H 0.96998 * 120.00027 * 359.97438 * 1 2 3 23 23 H 1.08002 * 124.63149 * 0.02562 * 15 14 12 24 24 H 1.08994 * 110.36627 * 135.70946 * 16 15 14 25 25 H 1.08996 * 110.36627 * 258.03915 * 16 15 14 26 26 H 1.09006 * 110.97812 * 93.05679 * 17 16 15 27 27 H 1.09001 * 110.98262 * 216.85000 * 17 16 15 28 28 H 1.09006 * 110.51508 * 44.68411 * 18 14 12 29 29 H 1.09006 * 110.24335 * 282.46344 * 18 14 12 30 30 H 1.09006 * 115.54851 * 34.41631 * 19 9 7 31 31 H 1.08999 * 117.49463 * 359.97438 * 20 19 9 32 32 H 1.08999 * 117.50422 * 145.01492 * 20 19 9 33 33 H 1.08996 * 117.50424 * 214.97875 * 21 19 9 34 34 H 1.09000 * 117.49553 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 8 2.1946 -3.6027 -0.0005 12 6 1.8017 -4.7439 -0.6011 13 8 0.7005 -4.8145 -1.1103 14 6 2.7045 -5.9027 -0.6390 15 6 2.4131 -7.0674 -1.2044 16 6 3.5675 -8.0329 -1.0667 17 6 4.4561 -7.4316 0.0461 18 6 4.0900 -5.9321 -0.0363 19 6 0.3719 -2.5805 1.2490 20 6 0.7539 -3.6085 2.3159 21 6 -0.4765 -3.8400 1.4351 22 1 -0.4850 0.8400 0.0004 23 1 1.4803 -7.2929 -1.6997 24 1 3.2052 -9.0177 -0.7720 25 1 4.1227 -8.0963 -2.0026 26 1 4.1942 -7.8443 1.0204 27 1 5.5128 -7.5878 -0.1711 28 1 4.0830 -5.4880 0.9592 29 1 4.7931 -5.4048 -0.6812 30 1 -0.0498 -1.6348 1.5895 31 1 1.6313 -4.2271 2.1274 32 1 0.5831 -3.3393 3.3582 33 1 -1.4562 -3.7231 1.8983 34 1 -0.4080 -4.6109 0.6675 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123462762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:11 Heat of formation + Delta-G solvation = -52.800447 kcal Electronic energy + Delta-G solvation = -16898.068738 eV Core-core repulsion = 14182.888087 eV Total energy + Delta-G solvation = -2715.180651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82908 -38.06010 -36.24869 -34.63703 -32.79290 -29.56137 -28.47470 -27.63205 -23.61255 -22.25528 -21.41204 -20.87431 -19.21716 -18.19489 -16.97209 -16.55425 -16.02255 -15.54502 -15.21956 -14.62943 -13.84668 -13.35986 -12.80719 -12.60651 -12.38669 -12.09695 -11.71058 -11.42300 -11.33527 -11.22486 -11.13595 -11.04880 -10.94431 -10.54013 -10.29067 -10.06434 -9.70820 -9.46010 -9.09674 -8.85193 -8.51097 -8.42627 -6.17825 -4.24804 1.50799 3.25319 3.30903 3.34657 3.58947 3.69591 4.33679 4.57277 4.74525 4.96396 4.98690 5.14943 5.27834 5.40494 5.66287 5.72227 5.84204 5.87517 5.90362 6.03874 6.12101 6.16913 6.20601 6.47636 6.48766 6.61192 6.71862 6.93127 7.04402 7.21406 7.58516 7.60494 7.84992 8.13017 8.63557 8.89300 9.39571 10.89527 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.031429 B = 0.006995 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.685150 B = 4001.744393 C = 4389.511290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.070 0.930 9 C 0.247 3.753 10 H 0.052 0.948 11 O -0.345 6.345 12 C 0.501 3.499 13 O -0.517 6.517 14 C -0.157 4.157 15 C -0.089 4.089 16 C -0.103 4.103 17 C -0.125 4.125 18 C -0.086 4.086 19 C -0.116 4.116 20 C -0.194 4.194 21 C -0.211 4.211 22 H 0.266 0.734 23 H 0.137 0.863 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.513 -12.152 0.679 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.555 4.555 8 H 0.088 0.912 9 C 0.195 3.805 10 H 0.069 0.931 11 O -0.260 6.260 12 C 0.346 3.654 13 O -0.409 6.409 14 C -0.158 4.158 15 C -0.107 4.107 16 C -0.140 4.140 17 C -0.162 4.162 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.231 4.231 21 C -0.247 4.247 22 H 0.076 0.924 23 H 0.155 0.845 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.147 0.853 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.034 -11.976 0.560 13.422 hybrid contribution 0.044 0.966 0.016 0.967 sum 6.079 -11.010 0.576 12.590 Atomic orbital electron populations 1.69982 1.05913 1.27301 1.49112 1.24905 0.95044 0.99277 0.94648 0.86307 0.79676 0.82060 0.78315 1.20396 1.20959 1.19553 1.20952 0.93961 0.88344 1.52269 0.91163 1.20145 0.86035 0.80381 0.93985 0.93061 1.86596 1.48860 1.21862 1.68728 1.20763 0.85132 0.83914 0.75610 1.90767 1.22133 1.83741 1.44230 1.21299 0.96957 0.93139 1.04413 1.24048 0.98564 0.93516 0.94579 1.21440 0.94605 0.98230 0.99707 1.22466 0.99646 0.95259 0.98851 1.21188 0.92745 0.96496 1.01871 1.23017 0.99250 0.93699 0.97472 1.22799 0.98581 1.05925 0.95786 1.23149 0.94470 1.03604 1.03525 0.92406 0.84478 0.90400 0.89763 0.90908 0.90621 0.90051 0.90079 0.85277 0.89786 0.90438 0.90528 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.59 55.43 0.64 -24.52 16 2 C 0.06 1.75 5.20 -17.82 -0.09 1.66 16 3 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.52 -14.52 8.90 -34.44 -0.31 -14.83 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.25 6.66 2.41 -27.88 -0.07 6.59 16 10 H 0.05 1.54 7.16 -51.93 -0.37 1.17 16 11 O -0.34 -8.30 8.20 -40.77 -0.33 -8.63 16 12 C 0.50 10.89 6.88 34.26 0.24 11.13 16 13 O -0.52 -12.44 13.86 -19.29 -0.27 -12.71 16 14 C -0.16 -2.61 6.09 -102.78 -0.63 -3.24 16 15 C -0.09 -1.21 10.43 -35.99 -0.38 -1.58 16 16 C -0.10 -1.01 6.80 -26.85 -0.18 -1.19 16 17 C -0.12 -1.24 7.16 -25.08 -0.18 -1.42 16 18 C -0.09 -1.16 6.56 -26.86 -0.18 -1.34 16 19 C -0.12 -2.92 5.27 -90.62 -0.48 -3.40 16 20 C -0.19 -4.19 9.80 -26.69 -0.26 -4.45 16 21 C -0.21 -4.74 9.85 -26.69 -0.26 -5.00 16 22 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.14 1.84 8.03 -52.49 -0.42 1.42 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.13 3.53 6.46 -51.93 -0.34 3.19 16 31 H 0.08 1.79 6.91 -51.93 -0.36 1.43 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.09 2.17 5.36 -51.93 -0.28 1.89 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -30.26 285.06 -8.15 -38.41 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.69 Total: 4.21 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.77 Total: -17.08 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.64 Total: -24.52 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.60 Total: -21.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.26 -8.15 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.390 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds