Wall clock time and date at job start Sun Mar 29 2020 21:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.21277 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99464 * 179.97438 * 10 9 7 13 13 C 1.47088 * 120.94235 * 179.71499 * 12 10 9 14 14 C 1.53808 * 108.98434 * 116.47227 * 13 12 10 15 15 N 1.46222 * 109.15203 * 45.82063 * 14 13 12 16 16 C 1.34792 * 128.59843 * 161.71218 * 15 14 13 17 17 N 1.30818 * 107.11872 * 179.38315 * 16 15 14 18 18 N 1.28926 * 109.74285 * 0.14408 * 17 16 15 19 19 C 1.29725 * 109.42595 * 0.11496 * 18 17 16 20 20 C 1.47524 * 120.95075 * 359.97438 * 12 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08999 * 109.50453 * 236.40079 * 13 12 10 25 25 H 1.09002 * 109.50671 * 356.54095 * 13 12 10 26 26 H 1.09001 * 109.61803 * 285.86466 * 14 13 12 27 27 H 1.09001 * 109.49670 * 165.70367 * 14 13 12 28 28 H 1.08002 * 126.44225 * 359.36854 * 16 15 14 29 29 H 1.08999 * 109.95327 * 342.48362 * 20 12 10 30 30 H 1.09006 * 109.95460 * 103.75803 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 8 3.4226 -3.4231 -0.0097 12 7 1.7808 -4.9153 -0.0155 13 6 2.7180 -6.0489 -0.0268 14 6 2.5436 -6.8552 1.2714 15 7 1.1173 -7.0581 1.5220 16 6 0.5254 -7.9629 2.3269 17 7 -0.7651 -7.7648 2.2454 18 7 -1.0060 -6.7919 1.4345 19 6 0.1135 -6.3334 0.9661 20 6 0.3351 -5.2087 -0.0159 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.5075 -6.6866 -0.8853 25 1 3.7400 -5.6755 -0.0916 26 1 2.9855 -6.3081 2.1041 27 1 3.0364 -7.8219 1.1682 28 1 1.0230 -8.7111 2.9262 29 1 -0.2236 -4.3265 0.2967 30 1 0.0183 -5.5172 -1.0122 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143188337.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:21 Heat of formation + Delta-G solvation = 53.538509 kcal Electronic energy + Delta-G solvation = -16493.604798 eV Core-core repulsion = 13711.787757 eV Total energy + Delta-G solvation = -2781.817041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.25975 -39.33659 -36.48488 -34.24726 -33.05259 -31.26961 -30.36579 -28.68060 -26.30669 -24.69020 -23.10202 -22.41127 -20.61429 -18.57904 -17.53346 -16.76165 -16.52085 -15.95608 -15.37873 -15.34871 -14.71478 -14.49542 -14.04000 -13.41723 -13.08449 -12.66858 -12.44263 -12.17694 -11.91718 -11.43922 -11.31353 -10.86638 -10.70216 -10.43935 -10.20702 -10.04416 -9.39304 -9.23770 -8.94928 -8.63605 -8.49618 -6.12787 -4.13968 1.79155 2.34917 2.86846 3.12106 3.32419 3.34697 3.36117 3.41377 4.15753 4.25242 4.40882 4.47250 4.72718 4.77208 5.13728 5.25127 5.31664 5.36262 5.56131 5.61184 5.77787 5.93514 6.09585 6.52578 6.78703 7.01583 7.16953 7.59668 7.88525 8.17758 8.70304 8.85632 8.96112 9.51471 10.99193 Molecular weight = 236.10amu Principal moments of inertia in cm(-1) A = 0.040454 B = 0.006233 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.972445 B = 4490.859600 C = 4951.814979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.006 3.994 10 C 0.526 3.474 11 O -0.533 6.533 12 N -0.639 5.639 13 C 0.096 3.904 14 C 0.089 3.911 15 N -0.469 5.469 16 C 0.149 3.851 17 N -0.302 5.302 18 N -0.285 5.285 19 C 0.172 3.828 20 C 0.200 3.800 21 H 0.264 0.736 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.218 0.782 29 H 0.130 0.870 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -14.724 0.939 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.033 4.033 10 C 0.318 3.682 11 O -0.408 6.408 12 N -0.377 5.377 13 C -0.028 4.028 14 C -0.035 4.035 15 N -0.161 5.161 16 C -0.139 4.139 17 N -0.142 5.142 18 N -0.125 5.125 19 C -0.097 4.097 20 C 0.075 3.925 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.135 0.865 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.234 0.766 29 H 0.147 0.853 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.797 -14.600 1.187 14.913 hybrid contribution 1.787 0.740 -0.010 1.934 sum 4.584 -13.860 1.177 14.645 Atomic orbital electron populations 1.69938 1.06023 1.27282 1.50349 1.25004 0.94930 0.99526 0.94965 0.86466 0.79388 0.82207 0.78851 1.20077 1.21254 1.20132 1.21073 0.94140 0.88970 1.51146 0.90744 1.19319 0.94093 0.90172 0.99713 1.22225 0.91220 0.82449 0.72259 1.90546 1.17959 1.83498 1.48768 1.48680 1.05377 1.06354 1.77300 1.21851 0.97873 0.88368 0.94714 1.22569 0.77350 1.02472 1.01088 1.46135 1.09244 1.26372 1.34317 1.26273 0.91402 0.97419 0.98761 1.74468 1.12173 1.12232 1.15318 1.74067 1.21552 1.07452 1.09461 1.25161 0.84515 0.98912 1.01083 1.20242 0.82507 0.94252 0.95534 0.92635 0.93139 0.92918 0.90554 0.86463 0.88778 0.87871 0.76578 0.85254 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.36 8.92 -34.44 -0.31 -14.67 16 8 H 0.07 2.15 6.75 -52.49 -0.35 1.80 16 9 C 0.01 0.14 3.89 -29.03 -0.11 0.03 16 10 C 0.53 11.03 7.70 -10.99 -0.08 10.94 16 11 O -0.53 -12.65 14.89 5.56 0.08 -12.56 16 12 N -0.64 -10.12 2.96 -173.11 -0.51 -10.64 16 13 C 0.10 1.12 6.46 -3.30 -0.02 1.10 16 14 C 0.09 0.85 7.20 -3.77 -0.03 0.82 16 15 N -0.47 -5.82 3.11 -115.21 -0.36 -6.18 16 16 C 0.15 1.77 12.81 -90.34 -1.16 0.61 16 17 N -0.30 -4.84 12.23 29.60 0.36 -4.47 16 18 N -0.29 -4.92 12.21 32.78 0.40 -4.52 16 19 C 0.17 2.60 7.88 -155.32 -1.22 1.38 16 20 C 0.20 2.91 6.65 -4.52 -0.03 2.88 16 21 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 22 H 0.05 1.25 7.55 -51.93 -0.39 0.86 16 23 H 0.05 1.27 8.13 -51.93 -0.42 0.84 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.12 1.45 7.01 -51.93 -0.36 1.08 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.22 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.13 2.04 6.26 -51.93 -0.32 1.72 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 261.15 15.07 3.94 3.94 Total: -1.00 -34.23 261.15 -6.54 -40.77 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -3.11 Total: -2.60 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -3.06 Total: 4.59 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.63 Total: -50.70 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.23 -6.54 -40.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188337.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.312 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds