Wall clock time and date at job start Sun Mar 29 2020 21:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99679 * 2 1 4 4 C 1.34770 * 120.00363 * 179.97438 * 2 1 3 5 5 O 1.21563 * 120.00307 * 2.18757 * 4 2 1 6 6 C 1.47839 * 120.00347 * 182.18681 * 4 2 1 7 7 C 1.40091 * 120.09376 * 172.84973 * 6 4 2 8 8 C 1.38297 * 117.99925 * 179.97438 * 7 6 4 9 9 C 1.39701 * 118.02664 * 0.02562 * 8 7 6 10 10 N 1.38381 * 120.05163 * 179.97438 * 9 8 7 11 11 C 1.36803 * 119.99927 * 0.02562 * 10 9 8 12 12 H 1.08003 * 120.00083 * 359.97438 * 11 10 9 13 13 C 1.38913 * 119.99982 * 180.02562 * 11 10 9 14 14 N 1.31483 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99960 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46912 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47016 * 119.99765 * 15 13 11 18 18 H 1.48500 * 109.47055 * 239.99686 * 15 13 11 19 19 N 1.32929 * 119.89435 * 0.02562 * 9 8 7 20 20 N 1.28360 * 122.15490 * 359.97438 * 19 9 8 21 21 H 1.08996 * 109.47438 * 239.99448 * 1 2 3 22 22 H 1.08993 * 109.47346 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.47102 * 119.99783 * 1 2 3 24 24 H 1.09000 * 109.47018 * 263.79537 * 3 2 1 25 25 H 1.09005 * 109.47043 * 23.80012 * 3 2 1 26 26 H 1.09001 * 109.46740 * 143.80153 * 3 2 1 27 27 H 1.08002 * 120.99678 * 359.95799 * 7 6 4 28 28 H 1.07994 * 120.98398 * 179.72862 * 8 7 6 29 29 H 0.96997 * 119.99681 * 180.02562 * 10 9 8 30 30 H 0.97005 * 120.00010 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5319 -2.2196 -0.0392 6 6 3.6165 -1.1675 0.0494 7 6 4.3139 -2.3730 0.2009 8 6 5.6954 -2.3232 0.2407 9 6 6.3108 -1.0741 0.1279 10 7 7.6906 -0.9757 0.1630 11 6 8.4533 -2.1021 0.3077 12 1 7.9784 -3.0683 0.3950 13 6 9.8384 -2.0033 0.3435 14 7 10.4165 -0.8271 0.2377 15 14 10.8798 -3.5414 0.5418 16 1 9.9943 -4.7295 0.6392 17 1 11.7766 -3.6869 -0.6328 18 1 11.6962 -3.4305 1.7773 19 7 5.5687 0.0198 -0.0122 20 7 4.2864 -0.0247 -0.0493 21 1 -0.3634 -0.5139 0.8899 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3634 -0.5138 -0.8901 24 1 2.4753 1.5280 -1.0216 25 1 1.5647 2.0536 0.4147 26 1 3.0973 1.1688 0.6069 27 1 3.7885 -3.3129 0.2845 28 1 6.2809 -3.2227 0.3603 29 1 8.1170 -0.1080 0.0849 30 1 11.3838 -0.7581 0.2623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182555.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:32 Heat of formation + Delta-G solvation = 39.815475 kcal Electronic energy + Delta-G solvation = -16048.259430 eV Core-core repulsion = 13265.847314 eV Total energy + Delta-G solvation = -2782.412116 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11568 -38.68721 -36.05008 -35.13812 -32.66276 -31.94741 -29.96462 -27.55155 -26.27781 -25.15660 -23.55593 -22.44917 -19.75995 -18.39706 -17.22466 -16.56273 -16.37296 -15.47000 -15.34645 -14.83198 -13.97200 -13.91117 -13.74817 -13.24231 -12.65058 -12.49595 -12.36604 -12.27673 -12.02306 -11.79569 -11.68049 -10.96711 -10.87470 -10.67497 -10.29483 -9.35928 -9.29406 -9.27662 -8.61991 -8.29839 -7.59684 -7.05502 -4.22592 1.61772 1.93490 2.89355 2.94356 2.99352 3.42036 3.43285 3.67157 4.42498 4.47136 4.89570 4.99084 5.34911 5.51104 5.61094 5.63324 5.69441 5.87358 5.95078 5.98836 6.11398 6.50903 6.63271 6.71191 6.87793 6.97292 7.10954 7.36152 7.74289 8.23235 8.61888 8.74524 8.93875 9.81639 10.08328 Molecular weight = 236.10amu Principal moments of inertia in cm(-1) A = 0.059476 B = 0.005267 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.662566 B = 5314.819080 C = 5761.191555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.616 5.616 3 C 0.079 3.921 4 C 0.591 3.409 5 O -0.563 6.563 6 C -0.135 4.135 7 C -0.028 4.028 8 C -0.204 4.204 9 C 0.284 3.716 10 N -0.485 5.485 11 C -0.308 4.308 12 H 0.113 0.887 13 C 0.032 3.968 14 N -0.859 5.859 15 Si 0.943 3.057 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.344 5.344 20 N -0.152 5.152 21 H 0.055 0.945 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.410 0.590 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 0.882 0.520 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.349 5.349 3 C -0.064 4.064 4 C 0.381 3.619 5 O -0.441 6.441 6 C -0.285 4.285 7 C -0.055 4.055 8 C -0.238 4.238 9 C 0.036 3.964 10 N -0.086 5.086 11 C -0.439 4.439 12 H 0.131 0.869 13 C -0.177 4.177 14 N -0.492 5.492 15 Si 0.768 3.232 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.199 1.199 19 N -0.209 5.209 20 N -0.007 5.007 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.128 0.872 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.247 0.753 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.623 1.787 0.361 7.838 hybrid contribution 0.849 -1.715 0.171 1.921 sum -6.775 0.072 0.533 6.796 Atomic orbital electron populations 1.21549 0.79941 1.01655 1.01833 1.47582 1.06339 1.07112 1.73892 1.22368 0.97921 0.83022 1.03138 1.17691 0.86022 0.82807 0.75392 1.90685 1.69616 1.31265 1.52524 1.21338 0.93810 0.92571 1.20796 1.21642 0.93346 0.98064 0.92460 1.21408 0.94159 0.98006 1.10192 1.19811 0.86677 0.91616 0.98320 1.40815 1.00481 1.10980 1.56354 1.20037 0.88469 0.87922 1.47498 0.86897 1.25569 0.97232 0.99311 0.95547 1.69663 1.12693 1.23789 1.43083 0.85577 0.79374 0.79694 0.78564 1.18574 1.19890 1.19897 1.72901 0.98840 1.24533 1.24675 1.72784 1.01069 1.23278 1.03534 0.92597 0.91070 0.92565 0.92741 0.92899 0.87201 0.84738 0.84376 0.75307 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 10.16 59.84 0.61 1.78 16 2 N -0.62 -9.97 3.27 -190.64 -0.62 -10.59 16 3 C 0.08 1.13 9.32 59.85 0.56 1.69 16 4 C 0.59 11.59 7.65 -12.34 -0.09 11.49 16 5 O -0.56 -12.07 16.41 5.31 0.09 -11.98 16 6 C -0.13 -2.78 6.70 -82.81 -0.55 -3.34 16 7 C -0.03 -0.56 9.71 -38.86 -0.38 -0.93 16 8 C -0.20 -4.25 9.40 -39.01 -0.37 -4.62 16 9 C 0.28 6.43 7.70 -154.96 -1.19 5.24 16 10 N -0.48 -11.34 5.42 -11.05 -0.06 -11.40 16 11 C -0.31 -7.14 9.55 -15.08 -0.14 -7.28 16 12 H 0.11 2.46 5.69 -52.48 -0.30 2.16 16 13 C 0.03 0.74 5.50 -17.45 -0.10 0.64 16 14 N -0.86 -20.67 13.05 55.50 0.72 -19.95 16 15 Si 0.94 17.58 29.55 -169.99 -5.02 12.55 16 16 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 18 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 19 N -0.34 -7.76 11.55 31.22 0.36 -7.40 16 20 N -0.15 -3.18 7.24 33.33 0.24 -2.94 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.66 7.71 -51.93 -0.40 0.26 16 23 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.59 7.79 -51.93 -0.40 0.18 16 26 H 0.11 1.83 5.26 -52.20 -0.27 1.55 16 27 H 0.13 2.45 7.73 -52.49 -0.41 2.05 16 28 H 0.14 2.66 6.02 -52.49 -0.32 2.35 16 29 H 0.41 9.84 8.01 -40.82 -0.33 9.52 16 30 H 0.29 6.37 8.31 -40.82 -0.34 6.03 16 LS Contribution 264.46 15.07 3.99 3.99 Total: -1.00 -26.97 264.46 -4.80 -31.77 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -2.83 Total: 11.28 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.66 Total: 4.67 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.64 Total: -52.28 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.02 Total: 12.55 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.97 -4.80 -31.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182555.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.583 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds