Wall clock time and date at job start Sun Mar 29 2020 21:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35896 * 117.00169 * 2 1 4 4 C 1.38758 * 120.05480 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94645 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05499 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.11249 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.97280 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.47193 * 205.00298 * 8 7 6 10 10 C 1.52999 * 109.47823 * 84.99645 * 8 7 6 11 11 O 1.42906 * 109.47195 * 324.99496 * 8 7 6 12 12 C 1.42894 * 114.00137 * 210.00422 * 11 8 7 13 13 C 1.50706 * 109.47263 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72549 * 13 12 11 16 16 N 1.31514 * 120.00481 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99745 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00365 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00213 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00116 * 17 15 13 21 21 C 1.38167 * 120.05462 * 0.23234 * 7 6 5 22 22 H 1.08996 * 109.47628 * 300.00179 * 1 2 3 23 23 H 1.09000 * 109.47081 * 60.00035 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.02328 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.97439 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.94492 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.46572 * 300.00333 * 10 8 7 29 29 H 1.08999 * 109.46394 * 59.99837 * 10 8 7 30 30 H 1.08997 * 109.47448 * 180.02562 * 10 8 7 31 31 H 1.09001 * 109.47678 * 60.00187 * 12 11 8 32 32 H 1.08998 * 109.47532 * 300.00132 * 12 11 8 33 33 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 34 34 H 1.07992 * 120.02605 * 179.74445 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0032 8 6 5.5607 2.5982 -0.0055 9 1 5.9730 1.6879 -0.4409 10 6 6.0656 2.7507 1.4306 11 8 5.9758 3.7261 -0.7787 12 6 7.2451 3.5602 -1.4136 13 6 7.5809 4.8026 -2.1977 14 1 6.8937 5.6358 -2.2095 15 6 8.7679 4.8782 -2.8948 16 7 9.0612 5.9626 -3.5787 17 14 9.9605 3.4406 -2.8670 18 1 9.6488 2.5171 -3.9873 19 1 11.3490 3.9464 -3.0141 20 1 9.8318 2.7156 -1.5774 21 6 3.4311 1.2848 -0.0081 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2128 2.3203 0.0005 26 1 1.3339 4.5114 0.0000 27 1 3.7921 4.6381 -0.0024 28 1 5.6533 3.6611 1.8659 29 1 5.7490 1.8904 2.0203 30 1 7.1540 2.8098 1.4289 31 1 7.2050 2.7051 -2.0884 32 1 8.0106 3.3899 -0.6566 33 1 9.8965 6.0158 -4.0688 34 1 4.0206 0.3800 -0.0135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205611112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:56 Heat of formation + Delta-G solvation = -63.543630 kcal Electronic energy + Delta-G solvation = -16172.882285 eV Core-core repulsion = 13457.235774 eV Total energy + Delta-G solvation = -2715.646511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.10314 -38.13994 -36.52757 -32.93148 -31.95241 -30.43491 -28.81970 -27.81258 -27.31525 -23.46101 -22.47206 -21.72304 -20.43790 -17.87016 -16.74022 -16.35744 -15.91530 -15.79206 -15.21976 -14.80343 -14.37000 -14.11462 -13.46911 -13.43440 -12.79153 -12.68024 -12.37830 -12.20498 -11.89456 -11.74101 -11.36161 -11.05749 -11.01556 -10.89119 -10.74218 -10.26448 -9.86318 -9.20153 -8.95527 -8.67970 -8.46040 -8.06676 -6.11906 -4.11047 1.42781 1.61688 3.20821 3.25001 3.32026 3.33044 3.89689 4.35277 4.56882 4.82063 4.93900 4.98811 5.04943 5.19404 5.22219 5.29626 5.45736 5.57926 5.63615 5.68163 5.77407 6.01921 6.09584 6.21250 6.37493 6.47007 6.58257 6.67236 6.85582 6.88416 7.00553 7.43203 7.58967 8.00608 8.64780 8.99205 9.47210 11.01106 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.039286 B = 0.005052 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.543864 B = 5540.602402 C = 5681.343898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.118 3.882 4 C -0.213 4.213 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.035 4.035 8 C 0.118 3.882 9 H 0.062 0.938 10 C -0.165 4.165 11 O -0.369 6.369 12 C 0.169 3.831 13 C -0.519 4.519 14 H 0.083 0.917 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.874 3.126 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.147 4.147 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.134 0.866 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.063 0.937 31 H -0.001 1.001 32 H 0.005 0.995 33 H 0.267 0.733 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.659 -10.646 9.142 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.073 3.927 4 C -0.232 4.232 5 C -0.104 4.104 6 C -0.141 4.141 7 C -0.035 4.035 8 C 0.059 3.941 9 H 0.080 0.920 10 C -0.223 4.223 11 O -0.288 6.288 12 C 0.094 3.906 13 C -0.557 4.557 14 H 0.101 0.899 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.701 3.299 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.190 1.190 21 C -0.165 4.165 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.152 0.848 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.017 0.983 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.535 -10.579 9.000 20.104 hybrid contribution 0.583 -0.777 -0.124 0.980 sum -13.952 -11.356 8.875 20.060 Atomic orbital electron populations 1.22997 0.78793 1.03560 1.01245 1.86043 1.21054 1.27212 1.89150 1.18865 0.92095 0.83971 0.97735 1.21161 0.99586 0.92528 1.09906 1.20958 0.94703 0.96806 0.97894 1.21046 0.93100 0.99200 1.00712 1.19711 0.95239 0.92303 0.96271 1.20733 0.89410 0.91494 0.92443 0.91966 1.22234 1.01848 1.02085 0.96112 1.87958 1.38875 1.36488 1.65453 1.20670 0.80710 0.97805 0.91462 1.20876 1.05139 1.00860 1.28776 0.89922 1.24752 0.97400 0.95950 0.94778 1.69870 1.24537 1.27249 1.31709 0.86872 0.80853 0.83034 0.79146 1.19896 1.20756 1.19036 1.20170 0.91278 0.97974 1.07109 0.92844 0.92768 0.88536 0.85909 0.85847 0.84779 0.91761 0.92349 0.91843 0.98294 0.97755 0.92349 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.08 10.50 -19.41 -0.20 -4.28 16 3 C 0.12 1.66 6.69 -39.21 -0.26 1.40 16 4 C -0.21 -2.73 9.04 -39.43 -0.36 -3.08 16 5 C -0.09 -1.16 10.04 -39.61 -0.40 -1.56 16 6 C -0.12 -1.98 9.35 -39.56 -0.37 -2.35 16 7 C -0.03 -0.58 5.00 -104.65 -0.52 -1.11 16 8 C 0.12 2.15 2.93 -27.89 -0.08 2.06 16 9 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 10 C -0.17 -2.59 9.51 37.16 0.35 -2.24 16 11 O -0.37 -8.52 9.11 -35.23 -0.32 -8.84 16 12 C 0.17 4.27 4.57 36.01 0.16 4.44 16 13 C -0.52 -15.40 9.99 -34.44 -0.34 -15.75 16 14 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 15 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 17 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.20 6.53 56.52 0.37 -5.83 16 21 C -0.15 -2.23 9.62 -39.43 -0.38 -2.61 16 22 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 23 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 24 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 26 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.13 2.29 7.62 -52.49 -0.40 1.89 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.01 7.87 -51.93 -0.41 0.61 16 31 H 0.00 -0.02 7.53 -51.93 -0.39 -0.41 16 32 H 0.00 0.12 6.91 -51.93 -0.36 -0.24 16 33 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 289.96 15.07 4.37 4.37 Total: -1.00 -32.31 289.96 -6.14 -38.45 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.79 Total: -2.03 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -1.30 Total: -17.51 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.52 Total: -13.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.31 -6.14 -38.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.096 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds