Wall clock time and date at job start Sun Mar 29 2020 21:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99671 * 2 1 4 4 C 1.38754 * 120.05978 * 0.20027 * 3 2 1 5 5 C 1.38115 * 119.94234 * 180.27971 * 4 3 2 6 6 C 1.38290 * 120.05791 * 359.76774 * 5 4 3 7 7 C 1.38244 * 120.11180 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.97178 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47336 * 160.01784 * 8 7 6 10 10 C 1.52995 * 109.47292 * 280.02104 * 8 7 6 11 11 O 1.42907 * 109.47452 * 40.02322 * 8 7 6 12 12 C 1.42891 * 114.00243 * 149.99967 * 11 8 7 13 13 C 1.50700 * 109.46937 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00124 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00194 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99757 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00401 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46773 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47439 * 119.99453 * 17 15 13 20 20 H 1.48494 * 109.47132 * 239.99761 * 17 15 13 21 21 C 1.38167 * 120.05373 * 0.02562 * 7 6 5 22 22 H 1.09002 * 109.47603 * 300.00651 * 1 2 3 23 23 H 1.09001 * 109.47062 * 60.00447 * 1 2 3 24 24 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.02374 * 0.02897 * 4 3 2 26 26 H 1.08007 * 119.97042 * 179.75154 * 5 4 3 27 27 H 1.08007 * 119.94201 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47367 * 60.00112 * 10 8 7 29 29 H 1.09006 * 109.47434 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.47417 * 299.99811 * 10 8 7 31 31 H 1.08997 * 109.47176 * 299.99713 * 12 11 8 32 32 H 1.09000 * 109.47300 * 59.99971 * 12 11 8 33 33 H 0.97002 * 120.00065 * 180.02562 * 16 15 13 34 34 H 1.08002 * 120.02367 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0042 5 6 1.9208 3.6047 -0.0017 6 6 3.3019 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0056 8 6 5.5607 2.5982 -0.0119 9 1 5.9769 1.6547 0.3410 10 6 6.0509 2.8711 -1.4353 11 8 5.9844 3.6572 0.8491 12 6 7.2600 3.4389 1.4547 13 6 7.6050 4.6117 2.3360 14 1 6.9188 5.4409 2.4244 15 6 8.7971 4.6264 3.0286 16 7 9.6329 3.6167 2.9206 17 14 9.2244 6.0798 4.1216 18 1 8.1249 7.0768 4.0715 19 1 9.4055 5.6118 5.5193 20 1 10.4825 6.7064 3.6425 21 6 3.4311 1.2848 0.0002 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2128 2.3204 0.0079 26 1 1.3339 4.5114 -0.0024 27 1 3.7922 4.6381 -0.0110 28 1 5.6348 3.8147 -1.7882 29 1 7.1393 2.9303 -1.4397 30 1 5.7279 2.0634 -2.0920 31 1 7.2263 2.5300 2.0555 32 1 8.0176 3.3332 0.6782 33 1 10.4714 3.6269 3.4082 34 1 4.0207 0.3799 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205611113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:58 Heat of formation + Delta-G solvation = -68.733463 kcal Electronic energy + Delta-G solvation = -16124.844509 eV Core-core repulsion = 13408.972950 eV Total energy + Delta-G solvation = -2715.871559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04996 -38.02681 -36.38122 -32.96482 -31.83281 -30.38310 -28.69676 -27.30062 -27.08126 -23.43220 -22.48982 -22.04261 -20.32810 -17.74865 -16.40584 -16.26175 -15.86173 -15.74896 -15.15640 -14.60868 -14.32052 -14.10801 -13.43141 -13.37303 -12.66506 -12.58766 -12.27224 -11.96913 -11.82323 -11.43271 -11.25364 -10.99186 -10.94515 -10.78592 -10.72189 -10.29370 -9.95373 -9.10549 -8.91363 -8.62264 -8.16327 -8.02275 -6.10578 -4.12097 1.48286 1.65995 3.25627 3.29718 3.36238 3.42645 3.94584 4.35710 4.76569 4.87228 5.01905 5.02954 5.09959 5.26028 5.28966 5.34478 5.56659 5.62383 5.73241 5.78249 5.88206 6.11921 6.18666 6.34623 6.43156 6.57327 6.69464 6.89034 6.94758 7.13502 7.44143 7.47857 7.80421 8.15566 8.56865 9.01236 9.52664 11.00957 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.039120 B = 0.004778 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.573159 B = 5858.236786 C = 5973.043482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.118 3.882 4 C -0.214 4.214 5 C -0.087 4.087 6 C -0.124 4.124 7 C -0.032 4.032 8 C 0.121 3.879 9 H 0.062 0.938 10 C -0.164 4.164 11 O -0.383 6.383 12 C 0.195 3.805 13 C -0.514 4.514 14 H 0.067 0.933 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.146 4.146 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.263 0.737 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 -4.766 -7.515 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.233 4.233 5 C -0.105 4.105 6 C -0.142 4.142 7 C -0.032 4.032 8 C 0.062 3.938 9 H 0.080 0.920 10 C -0.222 4.222 11 O -0.303 6.303 12 C 0.120 3.880 13 C -0.552 4.552 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.165 4.165 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.714 -4.853 -7.414 18.040 hybrid contribution 0.243 0.539 0.603 0.844 sum -15.471 -4.314 -6.812 17.446 Atomic orbital electron populations 1.22993 0.78861 1.03534 1.01193 1.86053 1.20998 1.27225 1.89147 1.18883 0.92121 0.83949 0.97704 1.21137 0.99524 0.92536 1.10116 1.20935 0.94691 0.96748 0.98123 1.21013 0.93064 0.99085 1.01053 1.19775 0.95531 0.92186 0.95718 1.20676 0.88932 0.92736 0.91444 0.92009 1.22226 1.02042 1.01752 0.96157 1.87910 1.39534 1.41236 1.61642 1.20274 0.78717 0.97179 0.91793 1.21090 1.03543 1.04423 1.26123 0.91478 1.24944 0.95835 0.96752 0.96947 1.69975 1.10330 1.30741 1.42703 0.86294 0.78349 0.82019 0.79919 1.19475 1.20846 1.20846 1.20225 0.91240 0.98111 1.06876 0.92798 0.92890 0.88552 0.85972 0.85974 0.85040 0.92058 0.91728 0.92560 0.97618 0.97499 0.92710 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.23 10.50 -19.44 -0.20 -4.44 16 3 C 0.12 1.72 6.69 -39.22 -0.26 1.46 16 4 C -0.21 -2.81 9.04 -39.44 -0.36 -3.17 16 5 C -0.09 -1.20 10.04 -39.61 -0.40 -1.60 16 6 C -0.12 -2.04 9.35 -39.56 -0.37 -2.41 16 7 C -0.03 -0.55 4.97 -104.65 -0.52 -1.07 16 8 C 0.12 2.33 2.92 -27.89 -0.08 2.25 16 9 H 0.06 1.18 7.65 -51.93 -0.40 0.79 16 10 C -0.16 -2.74 9.50 37.16 0.35 -2.39 16 11 O -0.38 -9.23 9.29 -35.23 -0.33 -9.56 16 12 C 0.19 5.33 5.50 36.01 0.20 5.53 16 13 C -0.51 -15.14 9.43 -34.44 -0.32 -15.46 16 14 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 C -0.15 -2.33 9.61 -39.43 -0.38 -2.71 16 22 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 23 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 26 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.13 2.23 7.77 -52.48 -0.41 1.82 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.12 7.87 -51.93 -0.41 0.72 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.01 0.17 8.08 -51.93 -0.42 -0.25 16 32 H 0.01 0.20 7.87 -51.93 -0.41 -0.21 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 34 H 0.13 1.90 8.04 -52.49 -0.42 1.48 16 LS Contribution 293.78 15.07 4.43 4.43 Total: -1.00 -31.87 293.78 -6.46 -38.33 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.83 Total: -2.67 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -1.25 Total: -16.79 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.53 Total: -14.00 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.87 -6.46 -38.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.400 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds