Wall clock time and date at job start Sun Mar 29 2020 21:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48493 * 109.47123 * 94.98851 * 3 2 1 5 5 H 1.48507 * 109.46564 * 214.98651 * 3 2 1 6 6 H 1.48498 * 109.47252 * 334.98499 * 3 2 1 7 7 C 1.37877 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00247 * 7.31203 * 7 2 1 9 9 C 1.50705 * 119.99438 * 187.31578 * 7 2 1 10 10 H 1.08999 * 109.47520 * 359.79724 * 9 7 2 11 11 O 1.42907 * 109.46859 * 119.79297 * 9 7 2 12 12 C 1.42898 * 114.00040 * 270.00171 * 11 9 7 13 13 C 1.53003 * 109.47244 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47260 * 179.97438 * 13 12 11 15 15 O 1.42894 * 109.46870 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46988 * 239.78884 * 9 7 2 17 17 C 1.38227 * 120.00302 * 278.54476 * 16 9 7 18 18 C 1.38237 * 119.99981 * 179.78955 * 17 16 9 19 19 C 1.38233 * 119.99927 * 0.44033 * 18 17 16 20 20 C 1.38233 * 119.99964 * 359.81409 * 19 18 17 21 21 C 1.38230 * 120.00011 * 359.97438 * 20 19 18 22 22 H 0.97001 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.46945 * 299.99856 * 12 11 9 24 24 H 1.08994 * 109.47591 * 59.99739 * 12 11 9 25 25 H 1.08996 * 109.46625 * 299.99360 * 13 12 11 26 26 H 1.08994 * 109.47281 * 59.99253 * 13 12 11 27 27 H 1.09001 * 109.46570 * 299.99995 * 14 13 12 28 28 H 1.09005 * 109.46759 * 59.99207 * 14 13 12 29 29 H 0.96704 * 113.99433 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.99979 * 359.97438 * 17 16 9 31 31 H 1.08003 * 120.00172 * 180.27146 * 18 17 16 32 32 H 1.08004 * 120.00230 * 179.83553 * 19 18 17 33 33 H 1.08001 * 119.99703 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.00029 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6020 1.9856 1.3947 5 1 3.4900 1.4728 -0.8028 6 1 1.3979 2.6808 -0.5920 7 6 2.0045 -1.1941 -0.0005 8 1 1.4710 -2.1255 -0.1200 9 6 3.5023 -1.1994 0.1657 10 1 3.8602 -0.1750 0.2680 11 8 3.8491 -1.9441 1.3350 12 6 3.9146 -1.1581 2.5265 13 6 4.2924 -2.0536 3.7082 14 6 4.3631 -1.2118 4.9839 15 8 4.7153 -2.0483 6.0875 16 6 4.1395 -1.8359 -1.0426 17 6 4.2088 -3.2128 -1.1427 18 6 4.7894 -3.7967 -2.2531 19 6 5.3088 -3.0035 -3.2590 20 6 5.2442 -1.6265 -3.1564 21 6 4.6597 -1.0427 -2.0481 22 1 -0.4850 0.8400 0.0004 23 1 4.6671 -0.3786 2.4067 24 1 2.9435 -0.6998 2.7134 25 1 3.5402 -2.8332 3.8282 26 1 5.2636 -2.5115 3.5212 27 1 5.1155 -0.4324 4.8635 28 1 3.3919 -0.7535 5.1710 29 1 4.7782 -1.5802 6.9314 30 1 3.8066 -3.8325 -0.3549 31 1 4.8396 -4.8726 -2.3335 32 1 5.7648 -3.4596 -4.1253 33 1 5.6497 -1.0069 -3.9425 34 1 4.6097 0.0331 -1.9677 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217878112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:20 Heat of formation + Delta-G solvation = -81.667896 kcal Electronic energy + Delta-G solvation = -16438.749495 eV Core-core repulsion = 13722.317057 eV Total energy + Delta-G solvation = -2716.432438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.69371 -37.30114 -36.43894 -33.09594 -31.95618 -30.64370 -30.18226 -27.15164 -24.83026 -22.76922 -21.90216 -21.04464 -20.10504 -17.37063 -17.16368 -16.25822 -15.70357 -15.62808 -14.79372 -14.39733 -13.92171 -13.78880 -13.30568 -13.20084 -12.80845 -12.60776 -12.27452 -11.73133 -11.61701 -11.28658 -11.08195 -11.01985 -10.54887 -10.49332 -10.29382 -9.88374 -9.83049 -9.45092 -8.81154 -8.50957 -8.24603 -7.81627 -6.29368 -4.31082 2.06527 2.10716 3.09435 3.17495 3.20274 4.04705 4.18930 4.50819 4.90205 5.12865 5.19769 5.39488 5.50423 5.55068 5.56646 5.69949 5.79118 5.92353 6.03454 6.09074 6.21239 6.29707 6.48947 6.53136 6.58841 6.70534 6.77269 7.11009 7.20734 7.37698 7.45593 7.63846 7.70887 8.16501 8.42685 8.84619 9.32150 10.82989 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.009111 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.608902 B = 3072.418519 C = 4241.200246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.079 3.921 3 Si 0.865 3.135 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.082 0.918 9 C 0.213 3.787 10 H 0.032 0.968 11 O -0.392 6.392 12 C 0.074 3.926 13 C -0.117 4.117 14 C 0.078 3.922 15 O -0.575 6.575 16 C -0.033 4.033 17 C -0.100 4.100 18 C -0.126 4.126 19 C -0.146 4.146 20 C -0.124 4.124 21 C -0.128 4.128 22 H 0.268 0.732 23 H 0.030 0.970 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.376 0.624 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.844 -0.329 2.966 10.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.198 1.198 5 H -0.187 1.187 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.100 0.900 9 C 0.157 3.843 10 H 0.049 0.951 11 O -0.312 6.312 12 C -0.003 4.003 13 C -0.155 4.155 14 C 0.000 4.000 15 O -0.380 6.380 16 C -0.034 4.034 17 C -0.118 4.118 18 C -0.145 4.145 19 C -0.164 4.164 20 C -0.142 4.142 21 C -0.146 4.146 22 H 0.078 0.922 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.222 0.778 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.700 -0.863 2.479 10.049 hybrid contribution 0.124 1.755 0.292 1.783 sum 9.825 0.892 2.770 10.247 Atomic orbital electron populations 1.69898 1.06219 1.27371 1.48263 1.25110 0.94806 0.98835 0.93800 0.87062 0.80537 0.84046 0.79151 1.19753 1.18686 1.20744 1.21292 0.89061 0.95389 1.50101 0.89961 1.19057 0.94567 0.89960 0.80703 0.95071 1.87799 1.90800 1.37076 1.15532 1.21996 0.99465 0.93009 0.85842 1.21378 1.03283 0.99225 0.91575 1.22085 0.98700 0.92523 0.86659 1.86475 1.93129 1.39421 1.18971 1.20169 0.92844 0.93849 0.96536 1.20963 0.98584 0.94789 0.97468 1.21065 0.99707 0.99058 0.94630 1.20896 1.02585 0.93869 0.99063 1.20926 1.00713 0.94850 0.97732 1.20964 0.99418 0.99584 0.94657 0.92187 0.95144 0.93005 0.90450 0.91083 0.93762 0.93318 0.77774 0.85943 0.86989 0.87196 0.87027 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.99 13.96 55.43 0.77 -25.22 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.87 20.35 26.96 -169.99 -4.58 15.76 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.26 -5.83 5.90 56.52 0.33 -5.50 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.52 9.16 -34.44 -0.32 -14.84 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.21 5.14 2.28 -29.03 -0.07 5.07 16 10 H 0.03 0.75 4.29 -51.93 -0.22 0.52 16 11 O -0.39 -9.00 9.24 -35.23 -0.33 -9.33 16 12 C 0.07 1.46 5.74 37.16 0.21 1.67 16 13 C -0.12 -1.95 5.95 -26.73 -0.16 -2.11 16 14 C 0.08 1.07 7.05 37.16 0.26 1.33 16 15 O -0.57 -7.53 13.66 -35.23 -0.48 -8.01 16 16 C -0.03 -0.75 4.96 -104.63 -0.52 -1.27 16 17 C -0.10 -2.06 9.36 -39.59 -0.37 -2.43 16 18 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 19 C -0.15 -2.40 10.05 -39.59 -0.40 -2.80 16 20 C -0.12 -2.16 10.05 -39.59 -0.40 -2.55 16 21 C -0.13 -2.60 9.67 -39.58 -0.38 -2.99 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.55 8.09 -51.92 -0.42 0.13 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.38 2.92 9.12 45.56 0.42 3.34 16 30 H 0.12 2.54 7.73 -52.49 -0.41 2.14 16 31 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.11 2.26 7.16 -52.49 -0.38 1.88 16 LS Contribution 291.35 15.07 4.39 4.39 Total: -1.00 -31.11 291.35 -6.87 -37.98 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.02 Total: 5.86 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.63 Total: -21.43 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.77 Total: -25.22 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.81 Total: -17.34 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.58 Total: 15.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.11 -6.87 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217878112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.689 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds