Wall clock time and date at job start Sun Mar 29 2020 21:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.40585 * 127.38181 * 2 1 4 4 N 1.28917 * 106.81822 * 179.97438 * 3 2 1 5 5 N 1.28421 * 110.31189 * 359.72487 * 4 3 2 6 6 C 1.31469 * 110.51096 * 0.45888 * 5 4 3 7 7 N 1.38385 * 126.44025 * 179.81641 * 6 5 4 8 8 C 1.46902 * 111.00129 * 62.02521 * 7 6 5 9 9 C 1.50705 * 109.47165 * 75.33406 * 8 7 6 10 10 H 1.08005 * 119.99512 * 356.28929 * 9 8 7 11 11 C 1.37872 * 119.99966 * 176.27767 * 9 8 7 12 12 N 1.31510 * 120.00196 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99755 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47132 * 60.00502 * 13 11 9 15 15 H 1.48501 * 109.46696 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47275 * 300.00207 * 13 11 9 17 17 C 1.46897 * 111.00099 * 298.07111 * 7 6 5 18 18 C 1.52997 * 109.47305 * 293.95415 * 17 7 6 19 19 C 1.47201 * 109.47247 * 179.97438 * 18 17 7 20 20 N 6.00127 * 100.25529 * 230.82223 * 2 1 3 21 21 H 1.09007 * 109.46866 * 264.88209 * 1 2 3 22 22 H 1.08996 * 109.47497 * 24.88195 * 1 2 3 23 23 H 1.09000 * 109.47269 * 144.88961 * 1 2 3 24 24 H 1.09000 * 109.47133 * 315.33910 * 8 7 6 25 25 H 1.08993 * 109.47157 * 195.33865 * 8 7 6 26 26 H 0.96999 * 120.00228 * 179.97438 * 12 11 9 27 27 H 1.08998 * 109.46853 * 53.95396 * 17 7 6 28 28 H 1.08995 * 109.47469 * 173.95224 * 17 7 6 29 29 H 1.08998 * 109.47150 * 299.99800 * 18 17 7 30 30 H 1.09010 * 109.47140 * 60.00015 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3184 1.1171 0.0000 4 7 3.5255 0.6643 0.0006 5 7 3.5198 -0.6199 0.0067 6 6 2.2865 -1.0752 0.0006 7 7 1.9009 -2.4042 0.0009 8 6 2.3653 -3.0869 1.2159 9 6 1.5057 -2.6751 2.3832 10 1 0.7341 -1.9312 2.2497 11 6 1.7041 -3.2481 3.6214 12 7 2.6437 -4.1536 3.7840 13 14 0.6380 -2.7380 5.0682 14 1 -0.7852 -3.0303 4.7616 15 1 1.0499 -3.4950 6.2776 16 1 0.8025 -1.2830 5.3156 17 6 2.3807 -3.0918 -1.2053 18 6 1.6819 -2.5103 -2.4359 19 6 2.1632 -3.1989 -3.6446 20 7 2.5333 -3.7306 -4.5778 21 1 -0.3633 -0.0917 1.0236 22 1 -0.3634 0.9322 -0.4324 23 1 -0.3634 -0.8407 -0.5911 24 1 3.4016 -2.8126 1.4133 25 1 2.2953 -4.1656 1.0758 26 1 2.7836 -4.5565 4.6553 27 1 3.4576 -2.9520 -1.2990 28 1 2.1577 -4.1560 -1.1299 29 1 0.6050 -2.6501 -2.3422 30 1 1.9050 -1.4460 -2.5114 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334447810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:01 Heat of formation + Delta-G solvation = 134.075533 kcal Electronic energy + Delta-G solvation = -16531.958533 eV Core-core repulsion = 13785.926591 eV Total energy + Delta-G solvation = -2746.031942 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.89821 -39.25937 -37.59435 -35.80128 -34.89597 -32.99839 -31.90849 -29.18904 -28.37255 -25.17996 -24.69403 -23.94295 -21.81884 -18.80308 -18.58174 -18.28295 -17.55132 -17.18688 -16.55369 -16.13958 -15.37737 -15.15054 -14.81898 -14.45344 -14.33654 -13.89209 -13.72280 -13.59835 -13.44950 -13.00055 -12.88991 -12.61674 -12.56544 -12.19007 -12.04880 -12.00955 -11.50482 -11.23988 -10.96843 -10.62910 -9.86720 -8.22413 -6.32338 0.05830 0.93559 1.30310 1.43985 1.45233 1.52161 1.64968 1.74832 2.36525 2.60949 3.11105 3.17805 3.47142 3.79247 3.95455 4.06080 4.41259 4.45426 4.49321 4.69300 4.77300 4.81947 4.88042 4.98174 5.10813 5.26598 5.49795 5.86168 6.02749 6.19436 6.51506 6.77601 7.36573 7.53408 8.87963 Molecular weight = 236.11amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.008474 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.199322 B = 3303.442702 C = 3970.152759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.355 5.355 3 N -0.100 5.100 4 N -0.068 5.068 5 N -0.386 5.386 6 C 0.439 3.561 7 N -0.451 5.451 8 C 0.214 3.786 9 C -0.528 4.528 10 H 0.069 0.931 11 C 0.011 3.989 12 N -0.927 5.927 13 Si 0.959 3.041 14 H -0.256 1.256 15 H -0.288 1.288 16 H -0.280 1.280 17 C 0.060 3.940 18 C -0.013 4.013 19 C 0.242 3.758 20 N -0.484 5.484 21 H 0.088 0.912 22 H 0.124 0.876 23 H 0.130 0.870 24 H -0.017 1.017 25 H 0.047 0.953 26 H 0.265 0.735 27 H 0.046 0.954 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 4.870 -7.842 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.153 5.153 3 N -0.088 5.088 4 N -0.064 5.064 5 N -0.243 5.243 6 C 0.073 3.927 7 N -0.179 5.179 8 C 0.089 3.911 9 C -0.566 4.566 10 H 0.087 0.913 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.784 3.216 14 H -0.180 1.180 15 H -0.214 1.214 16 H -0.205 1.205 17 C -0.068 4.068 18 C -0.053 4.053 19 C -0.075 4.075 20 N -0.162 5.162 21 H 0.107 0.893 22 H 0.142 0.858 23 H 0.148 0.852 24 H 0.000 1.000 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.134 0.866 29 H 0.176 0.824 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.006 4.960 -9.111 13.104 hybrid contribution -0.131 -0.260 1.532 1.560 sum -8.137 4.700 -7.579 12.072 Atomic orbital electron populations 1.22630 0.69356 1.07772 1.05985 1.51662 1.11053 1.03351 1.49270 1.82343 0.95370 1.07767 1.23284 1.77836 1.13764 1.03402 1.11393 1.74789 1.20588 1.03715 1.25243 1.23080 0.84746 0.90994 0.93880 1.59346 1.58586 0.94321 1.05633 1.19676 0.93499 0.94084 0.83837 1.21315 1.18115 1.23538 0.93632 0.91335 1.25737 0.96578 0.94934 1.01569 1.70031 1.33259 1.28354 1.24962 0.85583 0.79875 0.77827 0.78267 1.17985 1.21396 1.20533 1.22232 0.98162 1.00199 0.86247 1.19306 1.04384 0.98382 0.83202 1.29117 0.91957 0.92458 0.93975 1.81248 1.10592 1.11023 1.13340 0.89339 0.85759 0.85215 0.99953 0.93480 0.92569 0.93586 0.86611 0.82376 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.48 11.54 127.77 1.47 2.96 16 2 N -0.36 -10.60 4.09 -371.16 -1.52 -12.12 16 3 N -0.10 -3.47 13.93 37.02 0.52 -2.95 16 4 N -0.07 -2.70 13.38 37.02 0.50 -2.20 16 5 N -0.39 -15.76 11.79 -58.69 -0.69 -16.45 16 6 C 0.44 15.39 4.97 260.65 1.29 16.68 16 7 N -0.45 -14.95 4.47 -711.46 -3.18 -18.12 16 8 C 0.21 9.58 4.73 85.56 0.40 9.99 16 9 C -0.53 -25.83 8.94 25.60 0.23 -25.60 16 10 H 0.07 3.16 7.81 -2.91 -0.02 3.14 16 11 C 0.01 0.59 5.46 84.65 0.46 1.05 16 12 N -0.93 -51.49 13.29 21.44 0.28 -51.21 16 13 Si 0.96 40.56 29.54 68.60 2.03 42.58 16 14 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 15 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 C 0.06 1.56 4.87 86.30 0.42 1.98 16 18 C -0.01 -0.22 5.67 28.79 0.16 -0.06 16 19 C 0.24 5.51 15.43 89.44 1.38 6.89 16 20 N -0.48 -13.95 18.54 20.01 0.37 -13.58 16 21 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 22 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.13 1.61 8.14 -2.39 -0.02 1.60 16 24 H -0.02 -0.92 7.77 -2.39 -0.02 -0.94 16 25 H 0.05 2.18 7.74 -2.39 -0.02 2.16 16 26 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.05 1.36 7.98 -2.39 -0.02 1.34 16 28 H 0.12 2.73 7.83 -2.39 -0.02 2.71 16 29 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 1.82 7.40 -2.38 -0.02 1.80 16 Total: -1.00 -67.46 279.36 5.29 -62.17 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: 1.16 Total: -2.00 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.83 Total: 13.88 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.72 Total: -116.64 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -67.46 5.29 -62.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334447810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.246 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds