Wall clock time and date at job start Sun Mar 29 2020 21:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00393 * 2 1 4 4 H 1.48496 * 109.47023 * 270.00019 * 3 2 1 5 5 H 1.48503 * 109.47041 * 29.99774 * 3 2 1 6 6 H 1.48500 * 109.47388 * 149.99434 * 3 2 1 7 7 C 1.37879 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00073 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99908 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47358 * 59.99728 * 9 7 2 11 11 O 1.45194 * 109.47218 * 180.02562 * 9 7 2 12 12 C 1.34234 * 116.99937 * 210.00264 * 11 9 7 13 13 O 1.20820 * 119.99748 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99724 * 179.97438 * 12 11 9 15 15 H 1.08999 * 115.55579 * 325.66712 * 14 12 11 16 16 C 1.53013 * 117.49959 * 111.37783 * 14 12 11 17 17 C 1.52997 * 59.99855 * 107.48722 * 16 14 12 18 18 C 1.52998 * 138.59062 * 130.89372 * 17 16 14 19 19 C 1.52995 * 138.58955 * 229.10874 * 17 16 14 20 20 C 1.53006 * 109.46866 * 300.00133 * 9 7 2 21 21 C 1.53001 * 117.49866 * 248.62084 * 20 9 7 22 22 C 1.53000 * 117.49497 * 179.97438 * 20 9 7 23 23 H 0.97005 * 119.99945 * 0.02562 * 1 2 3 24 24 H 1.09000 * 117.49722 * 214.97230 * 16 14 12 25 25 H 1.08995 * 117.49494 * 359.97438 * 16 14 12 26 26 H 1.08995 * 117.49787 * 238.38448 * 18 17 16 27 27 H 1.08998 * 117.49556 * 23.40544 * 18 17 16 28 28 H 1.09000 * 117.49670 * 336.59938 * 19 17 16 29 29 H 1.09001 * 117.49631 * 121.61809 * 19 17 16 30 30 H 1.08996 * 115.55031 * 34.33570 * 20 9 7 31 31 H 1.08996 * 117.49555 * 359.97438 * 21 20 9 32 32 H 1.08995 * 117.49577 * 145.02406 * 21 20 9 33 33 H 1.08998 * 117.49694 * 214.97781 * 22 20 9 34 34 H 1.08998 * 117.50118 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8745 -0.6802 0.8911 11 8 3.9954 -2.5631 0.0010 12 6 5.1748 -2.7926 0.5995 13 8 5.7828 -1.8797 1.1062 14 6 5.7404 -4.1888 0.6393 15 1 5.0074 -4.9908 0.7263 16 6 6.9966 -4.4661 -0.1892 17 6 7.0885 -4.3853 1.3358 18 6 7.6740 -5.1948 2.4946 19 6 7.9426 -3.6916 2.3987 20 6 4.0219 -0.4732 -1.2481 21 6 4.7242 -1.3173 -2.3136 22 6 5.5370 -0.3660 -1.4323 23 1 -0.4850 0.8401 -0.0004 24 1 7.0900 -5.4507 -0.6475 25 1 7.4135 -3.6388 -0.7634 26 1 6.9865 -5.5348 3.2690 27 1 8.5006 -5.8690 2.2704 28 1 8.9459 -3.3769 2.1114 29 1 7.4318 -3.0427 3.1101 30 1 3.4132 0.3640 -1.5894 31 1 4.8229 -2.3862 -2.1244 32 1 4.5774 -1.0356 -3.3562 33 1 5.9247 0.5413 -1.8954 34 1 6.1701 -0.8087 -0.6633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344937922.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:02 Heat of formation + Delta-G solvation = -12.762619 kcal Electronic energy + Delta-G solvation = -16965.990924 eV Core-core repulsion = 14252.546443 eV Total energy + Delta-G solvation = -2713.444481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.75297 -39.38854 -37.97691 -36.61830 -34.93952 -33.65157 -30.80639 -26.22944 -24.61057 -23.33384 -23.28866 -22.36079 -21.21222 -20.09162 -18.97321 -18.55603 -17.78318 -17.44427 -16.39326 -15.89931 -15.86032 -15.55526 -15.07873 -14.77908 -14.08377 -13.67571 -13.51053 -13.21523 -12.77467 -12.69130 -12.45309 -12.35620 -12.17397 -11.93098 -11.51274 -11.45222 -11.18616 -11.13649 -11.00499 -10.92362 -10.79993 -10.67839 -8.47166 -6.55365 1.14433 1.19898 1.27689 1.39857 1.78241 2.17949 2.65075 2.78609 2.86652 2.96893 3.25878 3.71723 3.81528 3.86790 3.98557 4.05528 4.08508 4.38078 4.49700 4.61794 4.69460 4.73893 4.76261 4.78596 4.79521 4.97557 4.99616 5.01658 5.08798 5.21301 5.27531 5.34003 5.64108 6.12995 6.47900 6.90691 7.10167 8.68617 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.035219 B = 0.007213 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.843615 B = 3880.887068 C = 4044.781520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.033 3.967 3 Si 0.937 3.063 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.233 3.767 10 H 0.027 0.973 11 O -0.349 6.349 12 C 0.474 3.526 13 O -0.535 6.535 14 C -0.140 4.140 15 H 0.145 0.855 16 C -0.073 4.073 17 C -0.222 4.222 18 C -0.098 4.098 19 C -0.131 4.131 20 C -0.201 4.201 21 C -0.150 4.150 22 C -0.187 4.187 23 H 0.275 0.725 24 H 0.144 0.856 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.019 -8.048 -0.669 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.167 4.167 3 Si 0.761 3.239 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.179 3.821 10 H 0.045 0.955 11 O -0.265 6.265 12 C 0.319 3.681 13 O -0.426 6.426 14 C -0.159 4.159 15 H 0.163 0.837 16 C -0.109 4.109 17 C -0.222 4.222 18 C -0.134 4.134 19 C -0.168 4.168 20 C -0.220 4.220 21 C -0.187 4.187 22 C -0.223 4.223 23 H 0.085 0.915 24 H 0.162 0.838 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.147 0.853 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.984 -7.647 -0.532 18.634 hybrid contribution -0.694 1.174 0.200 1.378 sum 16.290 -6.473 -0.332 17.532 Atomic orbital electron populations 1.69961 1.07688 1.28791 1.50246 1.25513 0.95535 1.02215 0.93391 0.86024 0.79227 0.78944 0.79700 1.17678 1.20722 1.18120 1.20904 0.89077 0.94413 1.52890 0.93567 1.19991 0.92637 0.76108 0.93366 0.95535 1.86500 1.35918 1.34341 1.69784 1.23409 0.79039 0.91712 0.73908 1.90537 1.60419 1.47084 1.44513 1.21602 0.92717 0.91375 1.10175 0.83722 1.22860 0.92883 1.04913 0.90278 1.21537 0.95802 1.11189 0.93706 1.22922 1.01722 0.93580 0.95174 1.22687 0.99662 0.96063 0.98412 1.23158 0.95120 1.03211 1.00481 1.22895 1.02091 0.97559 0.96177 1.23272 0.93050 1.02634 1.03370 0.91531 0.83767 0.88415 0.87944 0.85279 0.87134 0.90364 0.88398 0.88686 0.86903 0.87261 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.96 21.45 0.30 -57.35 16 2 C 0.03 1.97 5.44 84.65 0.46 2.43 16 3 Si 0.94 45.33 24.48 68.60 1.68 47.01 16 4 H -0.25 -11.24 6.73 99.48 0.67 -10.57 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.26 -12.37 6.53 99.48 0.65 -11.72 16 7 C -0.54 -32.25 9.48 25.60 0.24 -32.01 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 9 C 0.23 12.14 2.00 29.85 0.06 12.20 16 10 H 0.03 1.50 6.21 -2.39 -0.01 1.48 16 11 O -0.35 -16.45 8.39 -51.46 -0.43 -16.88 16 12 C 0.47 19.09 6.69 71.23 0.48 19.56 16 13 O -0.53 -23.62 13.29 21.98 0.29 -23.33 16 14 C -0.14 -4.05 6.30 -11.54 -0.07 -4.13 16 15 H 0.15 3.75 8.14 -2.39 -0.02 3.73 16 16 C -0.07 -1.54 10.23 30.60 0.31 -1.23 16 17 C -0.22 -5.28 5.05 -52.18 -0.26 -5.55 16 18 C -0.10 -1.67 10.53 30.59 0.32 -1.35 16 19 C -0.13 -3.00 10.17 30.59 0.31 -2.69 16 20 C -0.20 -9.14 4.45 -10.79 -0.05 -9.19 16 21 C -0.15 -5.52 9.80 30.61 0.30 -5.22 16 22 C -0.19 -6.98 9.85 30.61 0.30 -6.68 16 23 H 0.28 15.76 8.31 -92.70 -0.77 14.98 16 24 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.10 4.60 4.40 -2.39 -0.01 4.59 16 31 H 0.09 3.45 6.90 -2.39 -0.02 3.43 16 32 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.09 3.66 5.37 -2.39 -0.01 3.65 16 Total: -1.00 -70.95 282.98 5.24 -65.71 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.00 Total: 18.67 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 2.40 Total: -33.83 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.30 Total: -57.35 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.14 Total: -40.21 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.68 Total: 47.01 kcal Total: -70.95 5.24 -65.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344937922.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.949 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds