Wall clock time and date at job start Sun Mar 29 2020 22:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38920 * 119.68357 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11053 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48535 * 359.97438 * 5 4 3 7 7 C 1.38047 * 119.28923 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.58228 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46995 * 94.99624 * 8 7 6 10 10 C 1.46904 * 110.99871 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46900 * 325.00438 * 10 9 8 12 12 C 1.52997 * 109.46755 * 84.99841 * 10 9 8 13 13 C 1.50695 * 109.47127 * 205.00283 * 10 9 8 14 14 H 1.08003 * 120.00406 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99744 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00147 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99967 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46683 * 59.99934 * 17 15 13 19 19 H 1.48497 * 109.47242 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47171 * 300.00317 * 17 15 13 21 21 N 1.31961 * 120.83639 * 359.73555 * 7 6 5 22 22 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 23 23 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 25 25 H 1.08003 * 120.44509 * 359.96306 * 4 3 2 26 26 H 1.07998 * 120.75378 * 180.02562 * 5 4 3 27 27 H 1.08003 * 120.35720 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47123 * 214.99830 * 8 7 6 29 29 H 1.08994 * 109.46731 * 334.99895 * 8 7 6 30 30 H 1.00904 * 110.99953 * 56.04749 * 9 8 7 31 31 H 1.09002 * 109.47376 * 179.97438 * 12 10 9 32 32 H 1.09001 * 109.47637 * 300.00165 * 12 10 9 33 33 H 1.09006 * 109.47404 * 60.00201 * 12 10 9 34 34 H 0.96998 * 120.00046 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0005 5 6 4.0487 2.5130 0.0000 6 6 3.2507 3.6490 -0.0016 7 6 1.8773 3.5096 -0.0021 8 6 1.0047 4.7384 -0.0033 9 7 0.6235 5.0668 -1.3834 10 6 -0.2300 6.2618 -1.4235 11 1 -0.8734 6.2785 -0.5438 12 6 0.6476 7.5150 -1.4372 13 6 -1.0803 6.2303 -2.6673 14 1 -0.9950 5.4053 -3.3590 15 6 -1.9665 7.2552 -2.9226 16 7 -2.0694 8.2605 -2.0811 17 14 -3.0201 7.2165 -4.4647 18 1 -3.8721 6.0003 -4.4516 19 1 -3.8820 8.4250 -4.5058 20 1 -2.1431 7.1935 -5.6629 21 7 1.3187 2.3140 -0.0063 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.0230 0.3693 0.0016 26 1 5.1256 2.5944 0.0000 27 1 3.6996 4.6313 -0.0017 28 1 0.1078 4.5476 0.5859 29 1 1.5536 5.5740 0.4307 30 1 0.1697 4.2836 -1.8293 31 1 0.0144 8.4018 -1.4675 32 1 1.2626 7.5378 -0.5376 33 1 1.2911 7.4984 -2.3169 34 1 -2.6926 8.9818 -2.2609 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380250491.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:14 Heat of formation + Delta-G solvation = -3.787555 kcal Electronic energy + Delta-G solvation = -16248.407359 eV Core-core repulsion = 13567.644817 eV Total energy + Delta-G solvation = -2680.762542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48206 -37.95728 -35.82559 -33.02937 -32.09168 -30.80833 -28.54473 -27.12381 -25.42862 -24.58590 -22.80610 -21.66150 -19.77812 -18.10700 -16.78970 -16.28724 -15.91393 -15.84807 -14.93631 -14.42315 -14.17395 -13.87131 -13.64337 -13.04256 -12.81194 -12.45257 -12.05920 -11.76691 -11.62568 -11.19764 -11.05735 -10.86835 -10.75941 -10.33290 -10.14940 -10.06786 -9.71648 -9.40266 -8.85079 -8.48072 -8.29833 -7.31518 -6.02910 -4.09255 1.28230 1.44032 3.17196 3.31646 3.35748 3.38920 3.89895 4.34866 4.42087 4.91135 5.15719 5.21392 5.28281 5.31286 5.38510 5.41984 5.55257 5.70654 5.77188 5.94791 6.20611 6.22074 6.36762 6.58326 6.85711 7.12176 7.20224 7.33043 7.47170 7.77221 7.87881 8.07107 8.25938 8.35466 8.63131 9.00015 9.56471 11.03425 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.030379 B = 0.005571 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.457564 B = 5025.031231 C = 5638.498446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.314 6.314 3 C 0.317 3.683 4 C -0.203 4.203 5 C -0.044 4.044 6 C -0.192 4.192 7 C 0.187 3.813 8 C 0.105 3.895 9 N -0.680 5.680 10 C 0.212 3.788 11 H 0.003 0.997 12 C -0.125 4.125 13 C -0.518 4.518 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.535 5.535 22 H 0.061 0.939 23 H 0.092 0.908 24 H 0.058 0.942 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.335 0.665 31 H 0.081 0.919 32 H 0.005 0.995 33 H 0.032 0.968 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.694 -11.627 5.489 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.221 6.221 3 C 0.138 3.862 4 C -0.224 4.224 5 C -0.070 4.070 6 C -0.213 4.213 7 C 0.050 3.950 8 C -0.025 4.025 9 N -0.312 5.312 10 C 0.105 3.895 11 H 0.021 0.979 12 C -0.183 4.183 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.259 5.259 22 H 0.080 0.920 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.152 0.848 31 H 0.100 0.900 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.343 -11.425 5.383 15.137 hybrid contribution -0.770 -0.178 -0.506 0.939 sum 7.573 -11.603 4.877 14.689 Atomic orbital electron populations 1.22832 0.77279 1.02538 1.02833 1.86193 1.22914 1.24849 1.88129 1.19810 0.89328 0.84663 0.92442 1.20955 0.91966 0.99391 1.10042 1.21367 1.00312 0.91308 0.93989 1.21831 0.94131 0.99917 1.05407 1.21125 0.92226 0.91390 0.90219 1.20882 0.96571 0.91315 0.93743 1.60843 1.49285 1.08837 1.12232 1.19140 0.88688 0.85449 0.96266 0.97936 1.21726 0.98385 1.01467 0.96734 1.21204 1.20473 1.07067 1.06959 0.92300 1.24904 0.96937 0.95304 0.96777 1.69880 1.36738 1.10120 1.36152 0.86572 0.80168 0.77311 0.83415 1.20335 1.21266 1.20196 1.67142 1.41081 0.98490 1.19220 0.92027 0.88947 0.92371 0.84638 0.84390 0.84408 0.94236 0.89919 0.84771 0.90015 0.97638 0.94898 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.31 -4.46 10.48 -18.73 -0.20 -4.66 16 3 C 0.32 4.86 7.49 -17.12 -0.13 4.73 16 4 C -0.20 -2.61 10.04 -39.28 -0.39 -3.01 16 5 C -0.04 -0.53 10.17 -39.31 -0.40 -0.93 16 6 C -0.19 -2.72 9.71 -39.43 -0.38 -3.11 16 7 C 0.19 3.15 6.29 -82.60 -0.52 2.63 16 8 C 0.10 1.96 5.79 -4.97 -0.03 1.93 16 9 N -0.68 -14.91 6.29 -109.22 -0.69 -15.60 16 10 C 0.21 5.39 2.60 -68.87 -0.18 5.22 16 11 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 12 C -0.12 -3.08 9.19 37.16 0.34 -2.74 16 13 C -0.52 -14.36 8.59 -34.44 -0.30 -14.66 16 14 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 17 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 N -0.54 -9.13 9.13 -9.55 -0.09 -9.21 16 22 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 23 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 25 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 26 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 27 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 28 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 29 H 0.08 1.46 7.33 -51.93 -0.38 1.08 16 30 H 0.33 7.52 8.22 -39.29 -0.32 7.20 16 31 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 32 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 291.15 15.07 4.39 4.39 Total: -1.00 -29.80 291.15 -6.73 -36.53 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.72 Total: 3.73 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.03 Total: -6.76 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.15 Total: -49.60 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.20 Total: -4.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.80 -6.73 -36.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380250491.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.740 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds