Wall clock time and date at job start Sun Mar 29 2020 22:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38920 * 119.68357 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11053 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48535 * 359.97438 * 5 4 3 7 7 C 1.38047 * 119.28923 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.58228 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46995 * 94.99624 * 8 7 6 10 10 C 1.46904 * 110.99871 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46900 * 325.00438 * 10 9 8 12 12 C 1.52997 * 109.46755 * 84.99841 * 10 9 8 13 13 C 1.50695 * 109.47127 * 205.00283 * 10 9 8 14 14 H 1.08003 * 120.00406 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99744 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00147 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99967 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46683 * 59.99934 * 17 15 13 19 19 H 1.48497 * 109.47242 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47171 * 300.00317 * 17 15 13 21 21 N 1.31961 * 120.83639 * 359.73555 * 7 6 5 22 22 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 23 23 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 25 25 H 1.08003 * 120.44509 * 359.96306 * 4 3 2 26 26 H 1.07998 * 120.75378 * 180.02562 * 5 4 3 27 27 H 1.08003 * 120.35720 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47123 * 214.99830 * 8 7 6 29 29 H 1.08994 * 109.46731 * 334.99895 * 8 7 6 30 30 H 1.00904 * 110.99953 * 56.04749 * 9 8 7 31 31 H 1.09002 * 109.47376 * 179.97438 * 12 10 9 32 32 H 1.09001 * 109.47637 * 300.00165 * 12 10 9 33 33 H 1.09006 * 109.47404 * 60.00201 * 12 10 9 34 34 H 0.96998 * 120.00046 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0005 5 6 4.0487 2.5130 0.0000 6 6 3.2507 3.6490 -0.0016 7 6 1.8773 3.5096 -0.0021 8 6 1.0047 4.7384 -0.0033 9 7 0.6235 5.0668 -1.3834 10 6 -0.2300 6.2618 -1.4235 11 1 -0.8734 6.2785 -0.5438 12 6 0.6476 7.5150 -1.4372 13 6 -1.0803 6.2303 -2.6673 14 1 -0.9950 5.4053 -3.3590 15 6 -1.9665 7.2552 -2.9226 16 7 -2.0694 8.2605 -2.0811 17 14 -3.0201 7.2165 -4.4647 18 1 -3.8721 6.0003 -4.4516 19 1 -3.8820 8.4250 -4.5058 20 1 -2.1431 7.1935 -5.6629 21 7 1.3187 2.3140 -0.0063 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.0230 0.3693 0.0016 26 1 5.1256 2.5944 0.0000 27 1 3.6996 4.6313 -0.0017 28 1 0.1078 4.5476 0.5859 29 1 1.5536 5.5740 0.4307 30 1 0.1697 4.2836 -1.8293 31 1 0.0144 8.4018 -1.4675 32 1 1.2626 7.5378 -0.5376 33 1 1.2911 7.4984 -2.3169 34 1 -2.6926 8.9818 -2.2609 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380250491.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:14 Heat of formation + Delta-G solvation = -25.519614 kcal Electronic energy + Delta-G solvation = -16249.349732 eV Core-core repulsion = 13567.644817 eV Total energy + Delta-G solvation = -2681.704915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.59044 -39.08447 -37.59293 -34.78784 -33.39426 -32.22390 -30.16579 -28.27976 -27.37618 -26.15237 -23.88630 -22.94945 -21.73382 -19.27551 -18.53753 -17.64239 -17.03496 -16.89558 -16.83786 -15.99362 -15.58117 -15.39664 -14.96460 -14.48432 -14.15782 -13.91078 -13.53589 -13.14415 -13.01992 -12.82415 -12.73697 -12.54898 -12.25546 -12.19087 -12.14783 -11.90638 -10.94674 -10.82226 -10.60441 -10.53683 -9.43669 -9.13110 -8.14610 -6.28955 0.16362 0.38903 1.41533 1.43340 1.51176 2.16482 2.40354 2.75773 3.13778 3.17284 3.78887 3.87233 4.14103 4.22223 4.37733 4.39293 4.45802 4.57216 4.61101 4.75618 4.79884 4.85653 5.08644 5.13106 5.19890 5.29098 5.46094 5.54739 5.63823 5.84445 6.20818 6.25089 6.38854 6.68315 6.90607 6.94554 7.40981 8.90783 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.030379 B = 0.005571 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.457564 B = 5025.031231 C = 5638.498446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.318 6.318 3 C 0.293 3.707 4 C -0.194 4.194 5 C -0.032 4.032 6 C -0.192 4.192 7 C 0.159 3.841 8 C 0.111 3.889 9 N -0.674 5.674 10 C 0.215 3.785 11 H -0.029 1.029 12 C -0.112 4.112 13 C -0.541 4.541 14 H 0.054 0.946 15 C 0.016 3.984 16 N -0.915 5.915 17 Si 0.962 3.038 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.271 1.271 21 N -0.562 5.562 22 H 0.045 0.955 23 H 0.127 0.873 24 H 0.049 0.951 25 H 0.166 0.834 26 H 0.183 0.817 27 H 0.153 0.847 28 H 0.022 0.978 29 H 0.092 0.908 30 H 0.329 0.671 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 -12.713 5.100 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.226 6.226 3 C 0.114 3.886 4 C -0.214 4.214 5 C -0.057 4.057 6 C -0.213 4.213 7 C 0.023 3.977 8 C -0.019 4.019 9 N -0.305 5.305 10 C 0.107 3.893 11 H -0.011 1.011 12 C -0.171 4.171 13 C -0.580 4.580 14 H 0.073 0.927 15 C -0.184 4.184 16 N -0.554 5.554 17 Si 0.787 3.213 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.196 1.196 21 N -0.287 5.287 22 H 0.064 0.936 23 H 0.145 0.855 24 H 0.068 0.932 25 H 0.183 0.817 26 H 0.200 0.800 27 H 0.171 0.829 28 H 0.040 0.960 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.975 -12.517 5.004 16.770 hybrid contribution -1.225 0.087 -0.325 1.270 sum 8.751 -12.430 4.679 15.905 Atomic orbital electron populations 1.22951 0.76504 1.04412 1.01621 1.86191 1.23731 1.24460 1.88198 1.20232 0.90540 0.84426 0.93377 1.21413 0.91060 1.01093 1.07870 1.21849 1.02241 0.89877 0.91737 1.22053 0.93078 1.01673 1.04459 1.20851 0.93108 0.90508 0.93251 1.20816 0.96480 0.93116 0.91457 1.60769 1.47666 1.07568 1.14498 1.18967 0.88760 0.87349 0.94205 1.01146 1.21535 0.97910 0.99931 0.97703 1.21517 1.21492 1.07219 1.07748 0.92739 1.25700 0.98040 0.94874 0.99753 1.70002 1.37221 1.10556 1.37645 0.85552 0.78509 0.77515 0.79682 1.19832 1.20584 1.19638 1.66979 1.42448 0.99158 1.20118 0.93632 0.85520 0.93188 0.81692 0.79967 0.82949 0.95981 0.88964 0.85469 0.92348 0.95257 0.95175 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 10.38 113.37 1.18 2.12 16 2 O -0.32 -8.73 10.48 -89.92 -0.94 -9.67 16 3 C 0.29 8.68 7.49 84.79 0.63 9.31 16 4 C -0.19 -4.40 10.04 22.47 0.23 -4.17 16 5 C -0.03 -0.65 10.17 22.44 0.23 -0.42 16 6 C -0.19 -5.02 9.71 22.37 0.22 -4.80 16 7 C 0.16 5.28 6.29 42.50 0.27 5.55 16 8 C 0.11 4.22 5.79 85.56 0.50 4.71 16 9 N -0.67 -30.12 6.29 -499.47 -3.14 -33.26 16 10 C 0.22 11.24 2.60 44.17 0.11 11.36 16 11 H -0.03 -1.67 7.80 -2.39 -0.02 -1.69 16 12 C -0.11 -5.59 9.19 71.98 0.66 -4.93 16 13 C -0.54 -30.53 8.59 25.60 0.22 -30.31 16 14 H 0.05 3.04 7.62 -2.91 -0.02 3.02 16 15 C 0.02 0.89 5.30 84.66 0.45 1.34 16 16 N -0.92 -52.99 11.32 21.45 0.24 -52.74 16 17 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 N -0.56 -19.23 9.13 -296.99 -2.71 -21.94 16 22 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 23 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.05 1.24 8.11 -2.39 -0.02 1.22 16 25 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 27 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 28 H 0.02 0.90 8.05 -2.39 -0.02 0.88 16 29 H 0.09 3.25 7.33 -2.39 -0.02 3.23 16 30 H 0.33 15.23 8.22 -89.69 -0.74 14.49 16 31 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 32 H 0.03 1.26 7.45 -2.39 -0.02 1.24 16 33 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -64.93 291.15 0.52 -64.40 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.36 Total: 17.42 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 4.69 Total: -10.24 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -5.61 Total: -107.94 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.94 Total: -9.67 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -64.93 0.52 -64.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380250491.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.885 kcal (2) G-P(sol) polarization free energy of solvation -64.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds