Wall clock time and date at job start Sun Mar 29 2020 22:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47053 * 2 1 4 4 C 1.50706 * 109.47023 * 120.00259 * 2 1 3 5 5 H 1.08002 * 119.99600 * 120.00392 * 4 2 1 6 6 C 1.37872 * 119.99987 * 299.99909 * 4 2 1 7 7 N 1.31513 * 119.99922 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00100 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47070 * 89.99773 * 8 6 4 10 10 H 1.48491 * 109.47190 * 209.99962 * 8 6 4 11 11 H 1.48503 * 109.47003 * 330.00049 * 8 6 4 12 12 N 1.46903 * 109.47085 * 240.00304 * 2 1 3 13 13 C 1.46896 * 111.00196 * 84.99906 * 12 2 1 14 14 C 1.50699 * 109.47507 * 179.97438 * 13 12 2 15 15 C 1.34322 * 126.44113 * 89.97208 * 14 13 12 16 16 N 1.34485 * 107.66970 * 180.02562 * 15 14 13 17 17 C 1.30258 * 108.69703 * 359.97438 * 16 15 14 18 18 C 1.50697 * 125.61890 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.49992 * 351.28003 * 18 17 16 20 20 C 1.53000 * 117.50034 * 59.93776 * 18 17 16 21 21 O 1.33969 * 108.75843 * 0.22867 * 17 16 15 22 22 H 1.08994 * 109.47423 * 60.00131 * 1 2 3 23 23 H 1.09008 * 109.47403 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47286 * 299.99463 * 1 2 3 25 25 H 0.96996 * 119.99899 * 180.02562 * 7 6 4 26 26 H 1.00903 * 110.99817 * 208.95534 * 12 2 1 27 27 H 1.09004 * 109.47151 * 59.99886 * 13 12 2 28 28 H 1.09008 * 109.47000 * 300.00413 * 13 12 2 29 29 H 1.08000 * 126.17279 * 0.05761 * 15 14 13 30 30 H 1.09002 * 115.54932 * 205.60840 * 18 17 16 31 31 H 1.09000 * 117.49996 * 215.00670 * 19 18 17 32 32 H 1.08999 * 117.49664 * 0.02562 * 19 18 17 33 33 H 1.09008 * 117.49673 * 359.97438 * 20 18 17 34 34 H 1.08999 * 117.49942 * 144.97208 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9758 1.9948 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5885 -0.5214 -3.5558 15 6 1.8417 -1.1770 -4.4595 16 7 2.6757 -1.7013 -5.3750 17 6 3.8983 -1.3847 -5.0560 18 6 5.1349 -1.7768 -5.8227 19 6 4.9697 -2.7835 -6.9630 20 6 5.2429 -1.3102 -7.2758 21 8 3.8754 -0.6579 -3.9308 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.9034 -0.5281 4.4375 26 1 2.9173 -1.1205 -1.0288 27 1 2.7588 1.0463 -2.1182 28 1 1.0870 0.6164 -2.5525 29 1 0.7654 -1.2667 -4.4526 30 1 6.0546 -1.8235 -5.2394 31 1 5.7806 -3.4925 -7.1299 32 1 3.9664 -3.1618 -7.1589 33 1 4.4191 -0.7199 -7.6773 34 1 6.2335 -1.0495 -7.6484 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862324618.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:15 Heat of formation + Delta-G solvation = 55.175565 kcal Electronic energy + Delta-G solvation = -16084.132978 eV Core-core repulsion = 13405.927268 eV Total energy + Delta-G solvation = -2678.205709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.16646 -37.49565 -36.37756 -34.44632 -32.86770 -31.04186 -28.70820 -25.73753 -24.79488 -23.51818 -22.64512 -21.47565 -20.43774 -20.02050 -17.43786 -16.86319 -16.49163 -15.65623 -15.23577 -14.86397 -14.12056 -13.97847 -13.91302 -13.11940 -12.59037 -12.50454 -12.20518 -12.09158 -11.81324 -11.41643 -11.29222 -11.03476 -10.87846 -10.81652 -10.71834 -10.39380 -10.16137 -9.58266 -9.13410 -8.67163 -8.46298 -7.69802 -6.15356 -4.16412 1.54087 2.66236 2.75411 3.22790 3.31380 3.34501 3.63392 4.05268 4.32868 4.51680 4.63307 4.74486 5.01723 5.09942 5.18567 5.27278 5.36881 5.49468 5.57369 5.71528 5.79486 5.91450 5.98669 6.21832 6.29368 6.44184 6.47577 6.59833 6.70284 7.28454 7.45574 7.76284 7.87199 8.15542 8.50772 8.88280 9.45449 10.97514 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.054342 B = 0.004597 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.129237 B = 6090.046146 C = 6316.153928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.182 3.818 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.673 5.673 13 C 0.140 3.860 14 C -0.026 4.026 15 C -0.031 4.031 16 N -0.482 5.482 17 C 0.207 3.793 18 C -0.076 4.076 19 C -0.147 4.147 20 C -0.158 4.158 21 O -0.199 6.199 22 H 0.027 0.973 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.266 0.734 26 H 0.344 0.656 27 H 0.043 0.957 28 H 0.100 0.900 29 H 0.184 0.816 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.740 1.245 -18.576 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.074 3.926 3 H 0.022 0.978 4 C -0.561 4.561 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.306 5.306 13 C 0.010 3.990 14 C -0.079 4.079 15 C -0.170 4.170 16 N -0.211 5.211 17 C 0.001 3.999 18 C -0.095 4.095 19 C -0.184 4.184 20 C -0.196 4.196 21 O -0.085 6.085 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.163 0.837 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.201 0.799 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.000 0.662 -19.014 19.261 hybrid contribution 0.204 1.685 1.251 2.108 sum 3.204 2.347 -17.763 18.202 Atomic orbital electron populations 1.22091 0.98377 1.01294 0.97910 1.19584 0.91977 0.93085 0.87962 0.97799 1.21055 1.32651 1.13945 0.88483 0.90289 1.24925 0.95645 0.96751 0.95671 1.69885 1.45286 1.40207 0.97979 0.86791 0.80703 0.83423 0.76872 1.20371 1.22433 1.19354 1.60654 1.33465 1.31820 1.04632 1.20431 0.99933 0.92617 0.86019 1.23654 0.80006 1.04157 1.00123 1.22977 1.01010 1.00218 0.92805 1.70313 0.99774 1.22846 1.28202 1.24915 0.94710 0.94500 0.85768 1.19993 0.92398 1.07398 0.89732 1.23083 1.04560 0.92343 0.98450 1.23122 1.03768 0.98078 0.94617 1.84358 1.30131 1.57038 1.36987 0.95444 0.92112 0.94254 0.92458 0.83724 0.93934 0.88216 0.79936 0.85059 0.87596 0.87129 0.88141 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.89 37.16 0.33 -2.68 16 2 C 0.18 4.23 2.19 -68.86 -0.15 4.08 16 3 H 0.00 0.11 6.86 -51.93 -0.36 -0.25 16 4 C -0.52 -14.52 9.17 -34.44 -0.32 -14.83 16 5 H 0.08 2.38 7.86 -52.49 -0.41 1.97 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 8 Si 0.89 21.66 24.37 -169.99 -4.14 17.51 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.17 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16 12 N -0.67 -13.70 6.29 -109.22 -0.69 -14.39 16 13 C 0.14 2.34 6.03 -4.98 -0.03 2.31 16 14 C -0.03 -0.43 6.90 -35.69 -0.25 -0.67 16 15 C -0.03 -0.48 11.80 -17.77 -0.21 -0.69 16 16 N -0.48 -7.61 10.84 -11.10 -0.12 -7.73 16 17 C 0.21 3.08 7.89 -12.95 -0.10 2.97 16 18 C -0.08 -0.81 6.33 -91.77 -0.58 -1.39 16 19 C -0.15 -1.27 10.14 -26.69 -0.27 -1.54 16 20 C -0.16 -1.30 10.24 -26.70 -0.27 -1.58 16 21 O -0.20 -3.29 10.77 5.38 0.06 -3.23 16 22 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 23 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 24 H 0.04 0.88 3.27 -51.93 -0.17 0.71 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.34 7.26 8.22 -39.29 -0.32 6.94 16 27 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 28 H 0.10 1.51 7.44 -51.92 -0.39 1.13 16 29 H 0.18 2.46 8.06 -52.49 -0.42 2.03 16 30 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.10 7.88 -51.93 -0.41 0.69 16 33 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 285.88 15.07 4.31 4.31 Total: -1.00 -30.99 285.88 -6.34 -37.32 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.58 Total: 4.58 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.95 Total: -12.04 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.03 Total: -48.46 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.06 Total: -3.23 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.99 -6.34 -37.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862324618.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.500 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds