Wall clock time and date at job start Sun Mar 29 2020 22:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47053 * 2 1 4 4 C 1.50706 * 109.47023 * 120.00259 * 2 1 3 5 5 H 1.08002 * 119.99600 * 120.00392 * 4 2 1 6 6 C 1.37872 * 119.99987 * 299.99909 * 4 2 1 7 7 N 1.31513 * 119.99922 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00100 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47070 * 89.99773 * 8 6 4 10 10 H 1.48491 * 109.47190 * 209.99962 * 8 6 4 11 11 H 1.48503 * 109.47003 * 330.00049 * 8 6 4 12 12 N 1.46903 * 109.47085 * 240.00304 * 2 1 3 13 13 C 1.46896 * 111.00196 * 84.99906 * 12 2 1 14 14 C 1.50699 * 109.47507 * 179.97438 * 13 12 2 15 15 C 1.34322 * 126.44113 * 89.97208 * 14 13 12 16 16 N 1.34485 * 107.66970 * 180.02562 * 15 14 13 17 17 C 1.30258 * 108.69703 * 359.97438 * 16 15 14 18 18 C 1.50697 * 125.61890 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.49992 * 351.28003 * 18 17 16 20 20 C 1.53000 * 117.50034 * 59.93776 * 18 17 16 21 21 O 1.33969 * 108.75843 * 0.22867 * 17 16 15 22 22 H 1.08994 * 109.47423 * 60.00131 * 1 2 3 23 23 H 1.09008 * 109.47403 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47286 * 299.99463 * 1 2 3 25 25 H 0.96996 * 119.99899 * 180.02562 * 7 6 4 26 26 H 1.00903 * 110.99817 * 208.95534 * 12 2 1 27 27 H 1.09004 * 109.47151 * 59.99886 * 13 12 2 28 28 H 1.09008 * 109.47000 * 300.00413 * 13 12 2 29 29 H 1.08000 * 126.17279 * 0.05761 * 15 14 13 30 30 H 1.09002 * 115.54932 * 205.60840 * 18 17 16 31 31 H 1.09000 * 117.49996 * 215.00670 * 19 18 17 32 32 H 1.08999 * 117.49664 * 0.02562 * 19 18 17 33 33 H 1.09008 * 117.49673 * 359.97438 * 20 18 17 34 34 H 1.08999 * 117.49942 * 144.97208 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9758 1.9948 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5885 -0.5214 -3.5558 15 6 1.8417 -1.1770 -4.4595 16 7 2.6757 -1.7013 -5.3750 17 6 3.8983 -1.3847 -5.0560 18 6 5.1349 -1.7768 -5.8227 19 6 4.9697 -2.7835 -6.9630 20 6 5.2429 -1.3102 -7.2758 21 8 3.8754 -0.6579 -3.9308 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.9034 -0.5281 4.4375 26 1 2.9173 -1.1205 -1.0288 27 1 2.7588 1.0463 -2.1182 28 1 1.0870 0.6164 -2.5525 29 1 0.7654 -1.2667 -4.4526 30 1 6.0546 -1.8235 -5.2394 31 1 5.7806 -3.4925 -7.1299 32 1 3.9664 -3.1618 -7.1589 33 1 4.4191 -0.7199 -7.6773 34 1 6.2335 -1.0495 -7.6484 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862324618.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:15 Heat of formation + Delta-G solvation = 31.364361 kcal Electronic energy + Delta-G solvation = -16085.165509 eV Core-core repulsion = 13405.927268 eV Total energy + Delta-G solvation = -2679.238240 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.35477 -38.36246 -37.95285 -35.64158 -34.78503 -32.72559 -30.15219 -27.38336 -26.41279 -24.67074 -23.31534 -22.69876 -21.83242 -21.49471 -19.05429 -18.29202 -17.74818 -17.35901 -16.33943 -15.92419 -15.64086 -15.44167 -15.37341 -14.85748 -14.17868 -13.91907 -13.65335 -13.23251 -12.97322 -12.82219 -12.62971 -12.55173 -12.38213 -12.09519 -11.76215 -11.63055 -11.50487 -11.44321 -11.11543 -10.79678 -9.66247 -9.30089 -8.33494 -6.39819 0.35918 1.32048 1.36202 1.47125 1.56007 1.60536 2.29954 2.84995 3.01761 3.04379 3.47226 3.70746 3.79901 3.97499 4.03530 4.10653 4.37446 4.42070 4.54455 4.70860 4.73854 4.76733 4.84078 4.94808 4.98808 4.99611 5.08775 5.25499 5.35350 5.45123 5.59622 5.88310 6.34069 6.51495 6.68882 6.71054 7.26632 8.83153 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.054342 B = 0.004597 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.129237 B = 6090.046146 C = 6316.153928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.186 3.814 3 H 0.006 0.994 4 C -0.531 4.531 5 H 0.035 0.965 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.245 1.245 12 N -0.677 5.677 13 C 0.145 3.855 14 C -0.049 4.049 15 C -0.029 4.029 16 N -0.503 5.503 17 C 0.211 3.789 18 C -0.104 4.104 19 C -0.138 4.138 20 C -0.140 4.140 21 O -0.215 6.215 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.034 0.966 25 H 0.268 0.732 26 H 0.334 0.666 27 H 0.045 0.955 28 H 0.123 0.877 29 H 0.202 0.798 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 2.519 -20.659 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.077 3.923 3 H 0.024 0.976 4 C -0.569 4.569 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.227 1.227 11 H -0.169 1.169 12 N -0.309 5.309 13 C 0.016 3.984 14 C -0.101 4.101 15 C -0.168 4.168 16 N -0.232 5.232 17 C 0.005 3.995 18 C -0.123 4.123 19 C -0.175 4.175 20 C -0.178 4.178 21 O -0.103 6.103 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.151 0.849 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.219 0.781 30 H 0.165 0.835 31 H 0.152 0.848 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.483 1.935 -21.136 21.369 hybrid contribution 0.475 1.172 1.794 2.195 sum 2.958 3.107 -19.342 19.812 Atomic orbital electron populations 1.22005 0.96556 1.01306 0.99502 1.19444 0.93306 0.92446 0.87089 0.97606 1.21366 1.31838 1.12815 0.90879 0.94637 1.25847 0.97190 1.00246 0.95131 1.70042 1.47366 1.42516 0.98711 0.85739 0.79099 0.79457 0.77429 1.18923 1.22651 1.16862 1.60622 1.32943 1.32591 1.04697 1.20450 1.01339 0.91865 0.84707 1.23557 0.80236 1.05684 1.00639 1.23352 1.01957 0.99149 0.92293 1.70363 1.00325 1.23822 1.28739 1.25893 0.95878 0.92741 0.84981 1.20391 0.91366 1.09822 0.90745 1.23180 1.04721 0.93068 0.96580 1.23230 1.05005 0.97542 0.91978 1.84352 1.30414 1.57666 1.37858 0.91582 0.93024 0.94762 0.92339 0.84858 0.93733 0.85952 0.78092 0.83535 0.84843 0.88763 0.89155 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 8.89 71.98 0.64 -4.88 16 2 C 0.19 8.44 2.19 44.17 0.10 8.54 16 3 H 0.01 0.29 6.86 -2.39 -0.02 0.27 16 4 C -0.53 -30.08 9.17 25.60 0.23 -29.85 16 5 H 0.04 2.25 7.86 -2.91 -0.02 2.23 16 6 C 0.01 0.79 5.45 84.65 0.46 1.25 16 7 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 8 Si 0.96 43.91 24.37 68.60 1.67 45.59 16 9 H -0.26 -11.47 6.87 99.48 0.68 -10.79 16 10 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.24 -10.24 6.53 99.48 0.65 -9.59 16 12 N -0.68 -27.22 6.29 -499.45 -3.14 -30.36 16 13 C 0.15 4.65 6.03 85.56 0.52 5.17 16 14 C -0.05 -1.55 6.90 24.79 0.17 -1.38 16 15 C -0.03 -0.87 11.80 83.39 0.98 0.11 16 16 N -0.50 -15.48 10.84 -303.83 -3.29 -18.78 16 17 C 0.21 6.10 7.89 88.34 0.70 6.80 16 18 C -0.10 -2.03 6.33 -11.54 -0.07 -2.11 16 19 C -0.14 -2.08 10.14 30.62 0.31 -1.77 16 20 C -0.14 -1.95 10.24 30.62 0.31 -1.64 16 21 O -0.22 -7.06 10.77 -3.67 -0.04 -7.10 16 22 H 0.07 2.16 7.45 -2.39 -0.02 2.14 16 23 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.03 1.42 3.27 -2.39 -0.01 1.41 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.33 14.45 8.22 -89.69 -0.74 13.71 16 27 H 0.04 1.41 8.06 -2.38 -0.02 1.40 16 28 H 0.12 3.33 7.44 -2.38 -0.02 3.31 16 29 H 0.20 5.04 8.06 -2.91 -0.02 5.02 16 30 H 0.15 2.35 8.14 -2.39 -0.02 2.34 16 31 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.76 7.88 -2.39 -0.02 1.74 16 33 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.28 285.88 0.14 -68.14 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.29 Total: 20.86 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 4.35 Total: -19.75 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -6.14 Total: -107.73 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.04 Total: -7.10 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.67 Total: 45.59 kcal Total: -68.28 0.14 -68.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862324618.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.504 kcal (2) G-P(sol) polarization free energy of solvation -68.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds