Wall clock time and date at job start Sun Mar 29 2020 21:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.27954 * 126.67905 * 2 1 4 4 N 1.39291 * 113.12028 * 179.75346 * 3 2 1 5 5 C 1.46498 * 124.45822 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47306 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46864 * 299.96623 * 5 4 3 8 8 C 1.50690 * 109.47486 * 59.96903 * 5 4 3 9 9 H 1.08000 * 120.00237 * 0.02562 * 8 5 4 10 10 C 1.37879 * 120.00203 * 179.97438 * 8 5 4 11 11 N 1.31513 * 120.00388 * 180.02562 * 10 8 5 12 12 Si 1.86801 * 119.99811 * 0.02562 * 10 8 5 13 13 H 1.48500 * 109.47275 * 90.00105 * 12 10 8 14 14 H 1.48503 * 109.47107 * 209.99503 * 12 10 8 15 15 H 1.48495 * 109.47445 * 329.99727 * 12 10 8 16 16 C 1.35293 * 111.08571 * 0.02562 * 4 3 2 17 17 O 1.21298 * 127.75591 * 179.97438 * 16 4 3 18 18 C 1.50451 * 126.67467 * 179.67864 * 2 1 3 19 19 C 1.52739 * 116.13609 * 50.98478 * 18 2 1 20 20 C 1.53978 * 86.76605 * 216.82140 * 19 18 2 21 21 C 1.52755 * 116.09911 * 309.42189 * 18 2 1 22 22 H 1.09005 * 109.46795 * 0.02906 * 1 2 3 23 23 H 1.08996 * 109.46960 * 120.02786 * 1 2 3 24 24 H 1.09001 * 109.47497 * 240.03024 * 1 2 3 25 25 H 1.09001 * 109.47243 * 60.00494 * 7 5 4 26 26 H 1.09001 * 109.47472 * 180.02562 * 7 5 4 27 27 H 1.08999 * 109.48001 * 300.00217 * 7 5 4 28 28 H 0.97003 * 120.00749 * 180.02562 * 11 10 8 29 29 H 1.08998 * 113.66135 * 331.28678 * 19 18 2 30 30 H 1.08996 * 113.66935 * 102.35207 * 19 18 2 31 31 H 1.08994 * 113.58248 * 270.05813 * 20 19 18 32 32 H 1.08998 * 113.57962 * 139.25554 * 20 19 18 33 33 H 1.08998 * 113.66696 * 257.67577 * 21 18 2 34 34 H 1.08993 * 113.66936 * 28.64664 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2713 1.0262 0.0000 4 7 3.6254 0.6996 0.0055 5 6 4.7143 1.6796 0.0073 6 1 5.6719 1.1587 0.0123 7 6 4.6159 2.5536 -1.2446 8 6 4.6078 2.5468 1.2350 9 1 3.8091 2.3840 1.9435 10 6 5.5307 3.5474 1.4545 11 7 5.4380 4.3039 2.5263 12 14 6.9127 3.8285 0.2296 13 1 6.4708 4.8029 -0.8002 14 1 8.1021 4.3638 0.9394 15 1 7.2638 2.5423 -0.4244 16 6 3.8026 -0.6416 0.0090 17 8 4.8506 -1.2523 0.0136 18 6 2.4056 -1.2067 0.0068 19 6 2.1151 -2.2678 -1.0527 20 6 2.4910 -3.3117 0.0150 21 6 2.1083 -2.2600 1.0724 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5142 -0.8897 24 1 -0.3634 -0.5134 0.8902 25 1 3.6584 3.0745 -1.2497 26 1 5.4264 3.2824 -1.2436 27 1 4.6930 1.9264 -2.1327 28 1 6.0871 5.0081 2.6806 29 1 1.0688 -2.3089 -1.3553 30 1 2.8016 -2.2407 -1.8989 31 1 3.5501 -3.5690 0.0193 32 1 1.8421 -4.1874 0.0161 33 1 2.7894 -2.2265 1.9227 34 1 1.0604 -2.2977 1.3700 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899349379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:58 Heat of formation + Delta-G solvation = 47.791913 kcal Electronic energy + Delta-G solvation = -17259.963079 eV Core-core repulsion = 14581.437191 eV Total energy + Delta-G solvation = -2678.525888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.42167 -37.38295 -36.90306 -34.34767 -32.08926 -30.54651 -27.63265 -26.53109 -25.86005 -25.14877 -22.25126 -20.96618 -19.25028 -18.79731 -16.70522 -16.18164 -15.47875 -15.39232 -15.19120 -14.46441 -13.63046 -13.58116 -13.21076 -12.91941 -12.38737 -12.33926 -12.27381 -12.15272 -11.97135 -11.87347 -11.67681 -11.13687 -10.99341 -10.78185 -10.40127 -10.23190 -9.91531 -9.62614 -9.34883 -8.97738 -8.66534 -7.84402 -6.16814 -4.17915 1.97075 3.12316 3.20953 3.23306 3.32826 3.33164 4.11653 4.30238 4.34118 4.55524 4.66245 4.87657 5.12777 5.23763 5.45050 5.52113 5.62555 5.64520 5.66837 5.86224 5.92729 5.96124 6.05725 6.17284 6.25560 6.34088 6.38407 6.48818 6.70923 7.14493 7.21781 7.47871 8.24301 8.47121 8.54339 8.88230 9.41069 10.96094 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.035352 B = 0.007962 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.844511 B = 3515.909613 C = 3761.379430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.059 3.941 3 N -0.198 5.198 4 N -0.433 5.433 5 C 0.258 3.742 6 H 0.063 0.937 7 C -0.159 4.159 8 C -0.523 4.523 9 H 0.082 0.918 10 C 0.076 3.924 11 N -0.891 5.891 12 Si 0.881 3.119 13 H -0.274 1.274 14 H -0.291 1.291 15 H -0.265 1.265 16 C 0.513 3.487 17 O -0.508 6.508 18 C -0.147 4.147 19 C -0.096 4.096 20 C -0.137 4.137 21 C -0.097 4.097 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.267 0.733 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 -11.657 -6.772 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.134 4.134 3 N -0.004 5.004 4 N -0.251 5.251 5 C 0.158 3.842 6 H 0.080 0.920 7 C -0.217 4.217 8 C -0.562 4.562 9 H 0.100 0.900 10 C -0.127 4.127 11 N -0.528 5.528 12 Si 0.711 3.289 13 H -0.201 1.201 14 H -0.218 1.218 15 H -0.190 1.190 16 C 0.299 3.701 17 O -0.382 6.382 18 C -0.153 4.153 19 C -0.135 4.135 20 C -0.174 4.174 21 C -0.136 4.136 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.178 -10.683 -6.659 15.579 hybrid contribution 0.947 -0.245 -0.493 1.096 sum -8.231 -10.927 -7.153 15.437 Atomic orbital electron populations 1.20169 0.85542 1.04092 1.02778 1.24898 0.96878 0.90126 1.01534 1.74796 0.90032 1.26417 1.09173 1.50122 1.02662 1.05886 1.66470 1.19397 0.82839 0.86407 0.95573 0.91992 1.22430 1.02381 0.99772 0.97136 1.21064 1.14414 1.15269 1.05415 0.90009 1.24848 0.97194 0.95227 0.95408 1.69861 1.36401 1.20068 1.26511 0.86953 0.81824 0.79134 0.80992 1.20083 1.21818 1.19027 1.20473 0.89742 0.83416 0.76503 1.90679 1.31489 1.65749 1.50264 1.21791 0.95044 0.95685 1.02742 1.22476 1.02240 0.92864 0.95902 1.22956 1.02615 0.96610 0.95211 1.22483 1.02382 0.92651 0.96055 0.90033 0.90295 0.90160 0.91487 0.92813 0.94969 0.92296 0.88667 0.90897 0.89196 0.90874 0.90634 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.32 36.00 0.37 -0.31 16 2 C 0.06 0.93 6.88 -79.06 -0.54 0.38 16 3 N -0.20 -4.12 11.80 35.52 0.42 -3.70 16 4 N -0.43 -10.10 3.24 -54.81 -0.18 -10.28 16 5 C 0.26 6.63 2.58 -69.09 -0.18 6.45 16 6 H 0.06 1.68 6.76 -51.93 -0.35 1.32 16 7 C -0.16 -3.68 8.89 37.16 0.33 -3.35 16 8 C -0.52 -15.29 9.30 -34.44 -0.32 -15.61 16 9 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 10 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 11 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 12 Si 0.88 21.99 24.37 -169.99 -4.14 17.85 16 13 H -0.27 -6.56 6.87 56.52 0.39 -6.17 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 16 C 0.51 11.04 7.53 -10.76 -0.08 10.96 16 17 O -0.51 -12.06 17.24 5.54 0.10 -11.96 16 18 C -0.15 -2.32 1.12 -157.21 -0.18 -2.49 16 19 C -0.10 -1.16 7.38 -26.36 -0.19 -1.35 16 20 C -0.14 -1.57 7.86 -25.73 -0.20 -1.77 16 21 C -0.10 -1.25 7.37 -26.35 -0.19 -1.44 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 24 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 25 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 26 H 0.05 1.25 3.27 -51.93 -0.17 1.08 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.09 0.85 7.86 -51.93 -0.41 0.44 16 30 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.09 1.20 7.90 -51.93 -0.41 0.79 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 34 H 0.10 0.93 7.80 -51.93 -0.41 0.53 16 LS Contribution 280.34 15.07 4.22 4.22 Total: -1.00 -33.84 280.34 -4.80 -38.64 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.70 Total: -1.74 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.29 Total: -6.40 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 1.01 Total: -40.61 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.10 Total: -11.96 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.84 -4.80 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899349379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.432 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds