Wall clock time and date at job start Sun Mar 29 2020 23:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47444 * 270.00581 * 3 2 1 5 5 H 1.48507 * 109.46940 * 30.00685 * 3 2 1 6 6 H 1.48503 * 109.46918 * 150.00397 * 3 2 1 7 7 C 1.37882 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00144 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99588 * 359.97438 * 7 2 1 10 10 C 1.53117 * 109.52065 * 180.02562 * 9 7 2 11 11 C 1.53029 * 109.28096 * 182.37814 * 10 9 7 12 12 N 1.46853 * 109.52228 * 59.17762 * 11 10 9 13 13 C 1.46901 * 110.99742 * 174.16007 * 12 11 10 14 14 C 1.50701 * 109.46584 * 170.00149 * 13 12 11 15 15 N 1.33241 * 125.52736 * 269.99567 * 14 13 12 16 16 C 1.30834 * 109.83169 * 180.02562 * 15 14 13 17 17 N 1.34423 * 108.07591 * 0.02562 * 16 15 14 18 18 H 0.96997 * 126.82715 * 180.02562 * 17 16 15 19 19 N 1.30715 * 125.52961 * 90.00751 * 14 13 12 20 20 C 1.46842 * 111.19618 * 298.25928 * 12 11 10 21 21 C 1.53032 * 109.52462 * 61.74477 * 20 12 11 22 22 H 0.97002 * 119.99542 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.52375 * 300.12960 * 9 7 2 24 24 H 1.08999 * 109.50462 * 62.43313 * 10 9 7 25 25 H 1.09003 * 109.53489 * 302.34347 * 10 9 7 26 26 H 1.08997 * 109.46498 * 299.16377 * 11 10 9 27 27 H 1.08996 * 109.45667 * 179.18827 * 11 10 9 28 28 H 1.08997 * 109.46928 * 50.00714 * 13 12 11 29 29 H 1.08997 * 109.47237 * 289.99848 * 13 12 11 30 30 H 1.07998 * 125.96050 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.45835 * 181.75430 * 20 12 11 32 32 H 1.08996 * 109.46409 * 301.72451 * 20 12 11 33 33 H 1.08997 * 109.50700 * 180.87519 * 21 20 12 34 34 H 1.09007 * 109.50770 * 60.75712 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4752 -4.9851 -0.0605 12 7 0.6533 -5.0195 -1.2770 13 6 0.0071 -6.3287 -1.4388 14 6 -1.0108 -6.2527 -2.5475 15 7 -2.2943 -5.9270 -2.3993 16 6 -2.8969 -5.9576 -3.5602 17 7 -1.9929 -6.3107 -4.4902 18 1 -2.1484 -6.4155 -5.4419 19 7 -0.7779 -6.4958 -3.8106 20 6 -0.3404 -3.9384 -1.2771 21 6 0.3753 -2.5859 -1.2535 22 1 -0.4849 0.8401 0.0004 23 1 0.6227 -2.5570 0.8882 24 1 2.8429 -3.6320 0.9103 25 1 2.8997 -3.5844 -0.8684 26 1 0.8316 -5.0705 0.8151 27 1 2.1806 -5.8159 -0.0752 28 1 -0.4888 -6.6065 -0.5088 29 1 0.7595 -7.0771 -1.6871 30 1 -3.9389 -5.7375 -3.7398 31 1 -0.9537 -4.0090 -2.1754 32 1 -0.9754 -4.0287 -0.3959 33 1 -0.3627 -1.7839 -1.2379 34 1 1.0000 -2.4891 -2.1416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237607713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:03 Heat of formation + Delta-G solvation = 87.233343 kcal Electronic energy + Delta-G solvation = -16827.474408 eV Core-core repulsion = 14182.951580 eV Total energy + Delta-G solvation = -2644.522828 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.06748 -38.11697 -34.25658 -32.55205 -31.60995 -30.63432 -29.68945 -27.05669 -24.60433 -22.86076 -21.97548 -21.51990 -19.87248 -18.47609 -18.27774 -16.36997 -15.78968 -15.22088 -14.66752 -14.37242 -14.26349 -13.82178 -12.86498 -12.78510 -12.31767 -12.06611 -11.94133 -11.69218 -11.37545 -10.89780 -10.68947 -10.42118 -10.13030 -10.02114 -9.97403 -9.91024 -9.65173 -9.35060 -8.87956 -8.61551 -8.22381 -7.68990 -5.90305 -3.95524 1.65674 2.69329 2.92554 3.35698 3.42018 3.45537 4.14574 4.50524 4.65166 4.72715 5.00733 5.39609 5.66400 5.69573 5.82736 5.98050 6.20153 6.25905 6.36899 6.42435 6.43179 6.71408 6.73838 6.94546 7.02998 7.15154 7.22834 7.50954 7.67451 7.73678 7.89556 8.13138 8.14758 8.24079 8.55776 9.08269 9.68341 11.15788 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.006113 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.531828 B = 4579.455897 C = 5039.323505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.529 5.529 13 C 0.143 3.857 14 C 0.243 3.757 15 N -0.537 5.537 16 C 0.257 3.743 17 N -0.490 5.490 18 H 0.439 0.561 19 N -0.302 5.302 20 C 0.063 3.937 21 C -0.103 4.103 22 H 0.258 0.742 23 H 0.021 0.979 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.220 0.780 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.340 -12.424 -6.502 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.256 5.256 13 C 0.013 3.987 14 C -0.040 4.040 15 N -0.265 5.265 16 C -0.043 4.043 17 N -0.209 5.209 18 H 0.284 0.716 19 N -0.131 5.131 20 C -0.065 4.065 21 C -0.141 4.141 22 H 0.068 0.932 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.237 0.763 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.618 -12.348 -6.790 14.829 hybrid contribution -0.624 0.850 -0.179 1.069 sum -5.242 -11.498 -6.969 14.431 Atomic orbital electron populations 1.69894 1.05848 1.26181 1.51177 1.24977 0.94828 0.98968 0.95309 0.86644 0.79895 0.83738 0.77992 1.20822 1.21360 1.19980 1.21219 0.92865 0.90695 1.49942 0.92755 1.18693 0.92707 0.91741 0.93998 1.21672 0.98689 0.93620 1.00376 1.22140 0.95733 0.99569 0.89184 1.62205 1.23480 1.01066 1.38828 1.20384 0.92105 0.94335 0.91879 1.24116 0.91601 0.96018 0.92259 1.70496 1.06658 1.23815 1.25559 1.26070 0.97998 0.95814 0.84390 1.48149 1.07223 1.53928 1.11552 0.71602 1.78046 1.02200 1.25996 1.06854 1.22268 0.92660 0.92463 0.99060 1.21657 1.00075 0.93144 0.99230 0.93179 0.96042 0.92987 0.92452 0.95369 0.92134 0.92478 0.89035 0.76346 0.92889 0.95432 0.89090 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 11.38 55.43 0.63 -25.40 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.33 8.56 -34.44 -0.29 -14.62 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.11 -2.28 5.32 -26.66 -0.14 -2.42 16 11 C 0.06 1.13 5.42 -3.83 -0.02 1.11 16 12 N -0.53 -10.16 4.80 -236.13 -1.13 -11.29 16 13 C 0.14 2.32 5.91 -4.97 -0.03 2.29 16 14 C 0.24 3.99 5.91 -156.85 -0.93 3.06 16 15 N -0.54 -8.33 10.26 -11.98 -0.12 -8.45 16 16 C 0.26 2.79 13.13 -90.66 -1.19 1.60 16 17 N -0.49 -5.33 7.45 29.53 0.22 -5.11 16 18 H 0.44 2.90 8.96 -182.34 -1.63 1.27 16 19 N -0.30 -4.69 12.80 32.42 0.41 -4.27 16 20 C 0.06 1.35 4.94 -3.84 -0.02 1.33 16 21 C -0.10 -2.57 5.12 -26.65 -0.14 -2.71 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 28 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.22 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.05 1.14 5.97 -51.93 -0.31 0.83 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 2.52 6.18 -51.93 -0.32 2.20 16 34 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 277.72 15.07 4.19 4.19 Total: -1.00 -33.23 277.72 -9.91 -43.13 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.03 Total: -1.74 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -3.05 Total: -7.74 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.01 Total: -54.54 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.23 -9.91 -43.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237607713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.368 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds