Wall clock time and date at job start Sun Mar 29 2020 23:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47444 * 270.00581 * 3 2 1 5 5 H 1.48507 * 109.46940 * 30.00685 * 3 2 1 6 6 H 1.48503 * 109.46918 * 150.00397 * 3 2 1 7 7 C 1.37882 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00144 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99588 * 359.97438 * 7 2 1 10 10 C 1.53117 * 109.52065 * 180.02562 * 9 7 2 11 11 C 1.53029 * 109.28096 * 182.37814 * 10 9 7 12 12 N 1.46853 * 109.52228 * 59.17762 * 11 10 9 13 13 C 1.46901 * 110.99742 * 174.16007 * 12 11 10 14 14 C 1.50701 * 109.46584 * 170.00149 * 13 12 11 15 15 N 1.33241 * 125.52736 * 269.99567 * 14 13 12 16 16 C 1.30834 * 109.83169 * 180.02562 * 15 14 13 17 17 N 1.34423 * 108.07591 * 0.02562 * 16 15 14 18 18 H 0.96997 * 126.82715 * 180.02562 * 17 16 15 19 19 N 1.30715 * 125.52961 * 90.00751 * 14 13 12 20 20 C 1.46842 * 111.19618 * 298.25928 * 12 11 10 21 21 C 1.53032 * 109.52462 * 61.74477 * 20 12 11 22 22 H 0.97002 * 119.99542 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.52375 * 300.12960 * 9 7 2 24 24 H 1.08999 * 109.50462 * 62.43313 * 10 9 7 25 25 H 1.09003 * 109.53489 * 302.34347 * 10 9 7 26 26 H 1.08997 * 109.46498 * 299.16377 * 11 10 9 27 27 H 1.08996 * 109.45667 * 179.18827 * 11 10 9 28 28 H 1.08997 * 109.46928 * 50.00714 * 13 12 11 29 29 H 1.08997 * 109.47237 * 289.99848 * 13 12 11 30 30 H 1.07998 * 125.96050 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.45835 * 181.75430 * 20 12 11 32 32 H 1.08996 * 109.46409 * 301.72451 * 20 12 11 33 33 H 1.08997 * 109.50700 * 180.87519 * 21 20 12 34 34 H 1.09007 * 109.50770 * 60.75712 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4752 -4.9851 -0.0605 12 7 0.6533 -5.0195 -1.2770 13 6 0.0071 -6.3287 -1.4388 14 6 -1.0108 -6.2527 -2.5475 15 7 -2.2943 -5.9270 -2.3993 16 6 -2.8969 -5.9576 -3.5602 17 7 -1.9929 -6.3107 -4.4902 18 1 -2.1484 -6.4155 -5.4419 19 7 -0.7779 -6.4958 -3.8106 20 6 -0.3404 -3.9384 -1.2771 21 6 0.3753 -2.5859 -1.2535 22 1 -0.4849 0.8401 0.0004 23 1 0.6227 -2.5570 0.8882 24 1 2.8429 -3.6320 0.9103 25 1 2.8997 -3.5844 -0.8684 26 1 0.8316 -5.0705 0.8151 27 1 2.1806 -5.8159 -0.0752 28 1 -0.4888 -6.6065 -0.5088 29 1 0.7595 -7.0771 -1.6871 30 1 -3.9389 -5.7375 -3.7398 31 1 -0.9537 -4.0090 -2.1754 32 1 -0.9754 -4.0287 -0.3959 33 1 -0.3627 -1.7839 -1.2379 34 1 1.0000 -2.4891 -2.1416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237607713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:02 Heat of formation + Delta-G solvation = 64.137181 kcal Electronic energy + Delta-G solvation = -16828.475933 eV Core-core repulsion = 14182.951580 eV Total energy + Delta-G solvation = -2645.524353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.08140 -39.75937 -36.00977 -34.01953 -32.96043 -32.02877 -31.45464 -28.67680 -26.39491 -24.10414 -23.55131 -23.13293 -21.08591 -20.31045 -19.20749 -18.43661 -17.24311 -16.48430 -16.30598 -15.77555 -15.68485 -15.25792 -14.77436 -14.46123 -14.16655 -13.55196 -13.23159 -13.07931 -13.01919 -12.83188 -12.57526 -12.28191 -12.00503 -11.86571 -11.35974 -11.09178 -11.04010 -10.82643 -10.68120 -10.62149 -10.36478 -9.21402 -8.06293 -6.19978 0.68058 1.41772 1.42147 1.52799 1.83602 1.88553 2.44958 3.09263 3.20359 3.28442 3.71719 4.15995 4.23031 4.32351 4.38225 4.49871 4.63207 4.70293 4.79198 4.88601 4.99542 5.11638 5.24367 5.27795 5.32255 5.36586 5.56781 5.62985 5.98378 6.00679 6.20802 6.29587 6.30974 6.41545 6.91926 7.14771 7.47640 8.98461 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.006113 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.531828 B = 4579.455897 C = 5039.323505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.537 5.537 13 C 0.145 3.855 14 C 0.223 3.777 15 N -0.580 5.580 16 C 0.272 3.728 17 N -0.476 5.476 18 H 0.458 0.542 19 N -0.330 5.330 20 C 0.085 3.915 21 C -0.092 4.092 22 H 0.259 0.741 23 H -0.010 1.010 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.029 0.971 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.272 0.728 31 H 0.053 0.947 32 H 0.014 0.986 33 H 0.058 0.942 34 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -13.311 -7.264 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.061 4.061 12 N -0.263 5.263 13 C 0.015 3.985 14 C -0.060 4.060 15 N -0.310 5.310 16 C -0.026 4.026 17 N -0.196 5.196 18 H 0.307 0.693 19 N -0.161 5.161 20 C -0.043 4.043 21 C -0.130 4.130 22 H 0.068 0.932 23 H 0.008 0.992 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.287 0.713 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.593 -13.257 -7.584 15.949 hybrid contribution -0.705 1.102 -0.010 1.309 sum -5.299 -12.155 -7.594 15.280 Atomic orbital electron populations 1.70040 1.07235 1.26993 1.51624 1.25786 0.95689 1.02479 0.94898 0.85609 0.78820 0.79408 0.78124 1.20343 1.20868 1.19112 1.21600 0.93058 0.92185 1.50175 0.92885 1.18669 0.93187 0.92943 0.92720 1.21544 0.97903 0.93739 1.00530 1.22114 0.96071 0.98910 0.89032 1.62113 1.23117 1.01973 1.39136 1.20433 0.92864 0.92633 0.92570 1.24113 0.92168 0.97150 0.92533 1.70457 1.06771 1.25667 1.28099 1.27006 0.99478 0.93115 0.82983 1.48063 1.05987 1.52961 1.12573 0.69336 1.77919 1.04585 1.26697 1.06858 1.21864 0.92452 0.91593 0.98376 1.21410 0.99007 0.94475 0.98136 0.93151 0.99190 0.92085 0.93044 0.95309 0.88328 0.91790 0.86939 0.71301 0.92882 0.96821 0.92376 0.95821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.01 11.38 21.45 0.24 -54.77 16 2 C 0.01 0.55 5.31 84.66 0.45 1.00 16 3 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -30.51 8.56 25.60 0.22 -30.29 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.04 2.29 2.16 -11.46 -0.02 2.26 16 10 C -0.10 -4.25 5.32 30.64 0.16 -4.09 16 11 C 0.07 2.34 5.42 86.32 0.47 2.81 16 12 N -0.54 -20.11 4.80 -900.97 -4.32 -24.43 16 13 C 0.14 4.45 5.91 85.56 0.51 4.96 16 14 C 0.22 7.05 5.91 138.63 0.82 7.87 16 15 N -0.58 -17.17 10.26 -191.80 -1.97 -19.14 16 16 C 0.27 5.20 13.13 180.36 2.37 7.57 16 17 N -0.48 -9.23 7.45 -60.49 -0.45 -9.68 16 18 H 0.46 4.83 8.96 -213.10 -1.91 2.92 16 19 N -0.33 -9.75 12.80 -51.33 -0.66 -10.41 16 20 C 0.09 3.72 4.94 86.33 0.43 4.14 16 21 C -0.09 -4.74 5.12 30.64 0.16 -4.59 16 22 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 24 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 2.80 8.12 -2.39 -0.02 2.78 16 28 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 29 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.27 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.05 2.30 5.97 -2.39 -0.01 2.29 16 32 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 3.36 6.18 -2.39 -0.01 3.35 16 34 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -73.51 277.72 -0.39 -73.90 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -0.81 Total: 5.96 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.55 Total: -8.36 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -7.16 Total: -118.43 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -73.51 -0.39 -73.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237607713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.033 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds