Wall clock time and date at job start Sun Mar 29 2020 22:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76197 * 102.99800 * 2 1 4 4 C 1.39131 * 120.04227 * 359.97438 * 3 2 1 5 5 C 1.38155 * 120.08736 * 180.02562 * 4 3 2 6 6 C 1.38151 * 120.15972 * 359.97438 * 5 4 3 7 7 C 1.39110 * 120.07335 * 0.02562 * 6 5 4 8 8 N 1.39517 * 120.04124 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99934 * 144.86665 * 8 7 6 10 10 O 1.21742 * 119.99999 * 4.61195 * 9 8 7 11 11 C 1.46143 * 119.99652 * 184.60660 * 9 8 7 12 12 H 1.07998 * 120.00594 * 0.02562 * 11 9 8 13 13 C 1.40128 * 119.99565 * 180.02562 * 11 9 8 14 14 N 1.30638 * 120.00358 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99835 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47085 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47455 * 119.99852 * 15 13 11 18 18 H 1.48497 * 109.47217 * 240.00117 * 15 13 11 19 19 C 1.38771 * 120.03688 * 179.97438 * 3 2 1 20 20 H 1.08995 * 109.47298 * 300.00060 * 1 2 3 21 21 H 1.09001 * 109.47306 * 60.00038 * 1 2 3 22 22 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 23 23 H 1.08006 * 119.95146 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.91576 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.96129 * 180.02562 * 6 5 4 26 26 H 0.96994 * 119.99813 * 324.86479 * 8 7 6 27 27 H 0.97000 * 119.99610 * 179.97438 * 14 13 11 28 28 H 1.07997 * 120.07852 * 0.25899 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1934 2.6664 -0.0005 5 6 1.5031 4.0128 -0.0011 6 6 2.8228 4.4215 -0.0005 7 6 3.8448 3.4777 0.0000 8 7 5.1773 3.8912 0.0011 9 6 6.1032 3.1791 0.6733 10 8 5.7939 2.1307 1.2092 11 6 7.4787 3.6655 0.7587 12 1 7.7531 4.5957 0.2835 13 6 8.4416 2.9248 1.4571 14 7 8.1096 1.7998 2.0324 15 14 10.1996 3.5468 1.5669 16 1 10.3154 4.8349 0.8372 17 1 10.5648 3.7500 2.9919 18 1 11.1164 2.5496 0.9584 19 6 3.5371 2.1234 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.1606 2.3505 -0.0005 24 1 0.7116 4.7475 -0.0019 25 1 3.0612 5.4748 -0.0005 26 1 5.4372 4.6911 -0.4820 27 1 8.7763 1.2870 2.5155 28 1 4.3284 1.3885 -0.0033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000467477.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:45 Heat of formation + Delta-G solvation = -15.816977 kcal Electronic energy + Delta-G solvation = -13982.794796 eV Core-core repulsion = 11510.711733 eV Total energy + Delta-G solvation = -2472.083062 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13345 -36.90779 -33.51343 -32.47186 -30.43520 -29.71053 -28.31505 -26.18436 -22.46701 -22.10542 -19.86343 -17.76756 -16.99634 -15.87260 -15.57039 -15.07165 -14.58408 -14.05538 -13.89596 -13.67196 -13.22234 -12.75352 -12.64033 -12.23624 -12.04231 -11.41850 -11.16147 -11.13794 -11.02727 -10.64629 -10.31822 -9.92429 -9.58935 -9.09016 -8.86018 -7.77252 -7.22709 -7.00180 -6.34944 -4.82896 1.72872 1.83335 1.97876 2.74013 3.05988 3.14288 3.18734 3.98321 4.16387 4.49349 4.61866 5.11500 5.12444 5.28649 5.48145 5.62022 5.68655 5.71233 6.10958 6.14634 6.38605 6.79310 6.86513 7.04798 7.24395 7.30441 7.71209 8.03455 8.15347 8.84436 9.19905 10.37367 10.55955 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.040272 B = 0.006109 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.097822 B = 4582.049852 C = 5193.947321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.121 6.121 3 C -0.067 4.067 4 C -0.179 4.179 5 C -0.085 4.085 6 C -0.178 4.178 7 C 0.206 3.794 8 N -0.699 5.699 9 C 0.541 3.459 10 O -0.557 6.557 11 C -0.538 4.538 12 H 0.073 0.927 13 C 0.086 3.914 14 N -0.757 5.757 15 Si 0.913 3.087 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.274 1.274 19 C -0.107 4.107 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.102 0.898 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.395 0.605 27 H 0.272 0.728 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 1.970 -4.463 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.120 5.880 3 C -0.180 4.180 4 C -0.204 4.204 5 C -0.105 4.105 6 C -0.202 4.202 7 C 0.105 3.895 8 N -0.342 5.342 9 C 0.348 3.652 10 O -0.439 6.439 11 C -0.574 4.574 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.385 5.385 15 Si 0.737 3.263 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.133 4.133 20 H 0.099 0.901 21 H 0.098 0.902 22 H 0.120 0.880 23 H 0.131 0.869 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.228 0.772 27 H 0.083 0.917 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.238 -0.011 -3.922 10.963 hybrid contribution 0.114 1.903 -0.078 1.908 sum -10.124 1.892 -4.000 11.049 Atomic orbital electron populations 1.23608 0.96156 1.06351 1.05252 1.85605 1.04706 1.04617 1.93073 1.21504 0.96495 0.95487 1.04509 1.20860 0.97298 0.93199 1.09046 1.20622 0.95620 0.94874 0.99422 1.20951 0.92312 0.98685 1.08209 1.17839 0.85573 0.92114 0.94017 1.44153 1.04946 1.30865 1.54282 1.18434 0.85079 0.83807 0.77911 1.90637 1.80306 1.23736 1.49198 1.20869 0.91929 1.08723 1.35832 0.90903 1.25756 1.00452 0.93967 0.93376 1.69998 1.34552 1.10733 1.23257 0.86223 0.81803 0.79637 0.78624 1.18640 1.19993 1.19970 1.21088 0.94522 0.96045 1.01678 0.90077 0.90156 0.87970 0.86871 0.86438 0.86274 0.77193 0.91735 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.15 101.05 0.92 -0.69 15 2 S -0.12 -2.01 22.56 -107.50 -2.43 -4.44 15 3 C -0.07 -1.27 6.11 -39.05 -0.24 -1.51 15 4 C -0.18 -2.89 9.37 -39.28 -0.37 -3.26 15 5 C -0.08 -1.32 10.03 -39.64 -0.40 -1.71 15 6 C -0.18 -3.10 9.97 -39.29 -0.39 -3.50 15 7 C 0.21 4.39 6.29 -83.80 -0.53 3.86 15 8 N -0.70 -15.81 5.31 -11.22 -0.06 -15.87 15 9 C 0.54 15.07 7.58 -13.09 -0.10 14.97 15 10 O -0.56 -17.51 12.44 5.15 0.06 -17.45 15 11 C -0.54 -14.68 9.53 -35.70 -0.34 -15.02 15 12 H 0.07 1.80 7.85 -52.49 -0.41 1.39 15 13 C 0.09 2.32 5.50 -17.35 -0.10 2.22 15 14 N -0.76 -22.09 11.82 55.55 0.66 -21.43 15 15 Si 0.91 19.52 29.56 -169.99 -5.02 14.49 15 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 15 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 19 C -0.11 -2.40 8.42 -39.15 -0.33 -2.73 15 20 H 0.08 0.85 7.75 -51.93 -0.40 0.45 15 21 H 0.08 0.80 7.75 -51.92 -0.40 0.40 15 22 H 0.10 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.11 1.49 5.87 -52.48 -0.31 1.18 15 24 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 25 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.39 7.54 8.80 -40.82 -0.36 7.18 15 27 H 0.27 7.16 8.29 -40.82 -0.34 6.82 15 28 H 0.15 3.85 6.23 -52.49 -0.33 3.52 15 LS Contribution 261.76 15.07 3.94 3.94 Total: -1.00 -32.74 261.76 -7.32 -40.06 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -2.61 Total: 8.05 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.86 Total: -7.36 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.60 Total: -37.30 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.06 Total: -17.45 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.43 Total: -4.44 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.74 -7.32 -40.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000467477.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.243 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds