Wall clock time and date at job start Sun Mar 29 2020 22:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76197 * 102.99800 * 2 1 4 4 C 1.39131 * 120.04227 * 359.97438 * 3 2 1 5 5 C 1.38155 * 120.08736 * 180.02562 * 4 3 2 6 6 C 1.38151 * 120.15972 * 359.97438 * 5 4 3 7 7 C 1.39110 * 120.07335 * 0.02562 * 6 5 4 8 8 N 1.39517 * 120.04124 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99934 * 144.86665 * 8 7 6 10 10 O 1.21742 * 119.99999 * 4.61195 * 9 8 7 11 11 C 1.46143 * 119.99652 * 184.60660 * 9 8 7 12 12 H 1.07998 * 120.00594 * 0.02562 * 11 9 8 13 13 C 1.40128 * 119.99565 * 180.02562 * 11 9 8 14 14 N 1.30638 * 120.00358 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99835 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47085 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47455 * 119.99852 * 15 13 11 18 18 H 1.48497 * 109.47217 * 240.00117 * 15 13 11 19 19 C 1.38771 * 120.03688 * 179.97438 * 3 2 1 20 20 H 1.08995 * 109.47298 * 300.00060 * 1 2 3 21 21 H 1.09001 * 109.47306 * 60.00038 * 1 2 3 22 22 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 23 23 H 1.08006 * 119.95146 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.91576 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.96129 * 180.02562 * 6 5 4 26 26 H 0.96994 * 119.99813 * 324.86479 * 8 7 6 27 27 H 0.97000 * 119.99610 * 179.97438 * 14 13 11 28 28 H 1.07997 * 120.07852 * 0.25899 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1934 2.6664 -0.0005 5 6 1.5031 4.0128 -0.0011 6 6 2.8228 4.4215 -0.0005 7 6 3.8448 3.4777 0.0000 8 7 5.1773 3.8912 0.0011 9 6 6.1032 3.1791 0.6733 10 8 5.7939 2.1307 1.2092 11 6 7.4787 3.6655 0.7587 12 1 7.7531 4.5957 0.2835 13 6 8.4416 2.9248 1.4571 14 7 8.1096 1.7998 2.0324 15 14 10.1996 3.5468 1.5669 16 1 10.3154 4.8349 0.8372 17 1 10.5648 3.7500 2.9919 18 1 11.1164 2.5496 0.9584 19 6 3.5371 2.1234 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.1606 2.3505 -0.0005 24 1 0.7116 4.7475 -0.0019 25 1 3.0612 5.4748 -0.0005 26 1 5.4372 4.6911 -0.4820 27 1 8.7763 1.2870 2.5155 28 1 4.3284 1.3885 -0.0033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000467477.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:45 Heat of formation + Delta-G solvation = -38.488239 kcal Electronic energy + Delta-G solvation = -13983.777895 eV Core-core repulsion = 11510.711733 eV Total energy + Delta-G solvation = -2473.066162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78346 -38.70917 -35.35956 -34.54720 -31.84857 -31.10153 -29.56638 -28.12025 -24.00611 -23.66180 -21.66596 -19.59418 -18.62488 -17.60485 -17.19359 -16.63482 -16.19573 -15.76968 -15.15243 -14.86060 -14.60508 -14.52738 -14.23888 -13.60260 -13.40247 -13.19746 -12.84610 -12.80424 -12.56753 -12.37242 -12.00228 -11.31296 -11.08767 -10.94897 -10.42649 -9.88798 -8.92465 -8.40946 -8.33952 -6.96888 0.30063 0.52124 0.61237 1.38517 1.38975 1.57500 1.58622 2.19768 2.34665 2.80998 2.94376 3.54625 4.05123 4.20187 4.30754 4.31319 4.37335 4.63008 4.74499 4.85515 4.92793 5.23864 5.34288 5.47032 5.50969 5.77605 5.82818 6.14796 6.36456 6.75961 7.32179 8.33605 8.55515 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.040272 B = 0.006109 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.097822 B = 4582.049852 C = 5193.947321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.184 6.184 3 C -0.074 4.074 4 C -0.167 4.167 5 C -0.072 4.072 6 C -0.170 4.170 7 C 0.169 3.831 8 N -0.693 5.693 9 C 0.526 3.474 10 O -0.607 6.607 11 C -0.564 4.564 12 H 0.095 0.905 13 C 0.027 3.973 14 N -0.814 5.814 15 Si 1.004 2.996 16 H -0.244 1.244 17 H -0.268 1.268 18 H -0.268 1.268 19 C -0.145 4.145 20 H 0.094 0.906 21 H 0.099 0.901 22 H 0.126 0.874 23 H 0.154 0.846 24 H 0.170 0.830 25 H 0.148 0.852 26 H 0.409 0.591 27 H 0.277 0.723 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.813 4.159 -4.941 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.057 5.943 3 C -0.187 4.187 4 C -0.191 4.191 5 C -0.091 4.091 6 C -0.193 4.193 7 C 0.070 3.930 8 N -0.337 5.337 9 C 0.332 3.668 10 O -0.492 6.492 11 C -0.600 4.600 12 H 0.113 0.887 13 C -0.189 4.189 14 N -0.443 5.443 15 Si 0.823 3.177 16 H -0.166 1.166 17 H -0.193 1.193 18 H -0.193 1.193 19 C -0.172 4.172 20 H 0.113 0.887 21 H 0.118 0.882 22 H 0.145 0.855 23 H 0.171 0.829 24 H 0.187 0.813 25 H 0.166 0.834 26 H 0.245 0.755 27 H 0.087 0.913 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.260 2.213 -4.439 13.225 hybrid contribution 0.485 1.182 0.025 1.277 sum -11.775 3.394 -4.414 13.025 Atomic orbital electron populations 1.23744 0.90236 1.08544 1.06790 1.85824 1.11179 1.04334 1.92975 1.21653 0.95795 0.97011 1.04215 1.21390 0.98313 0.93023 1.06386 1.21229 0.95854 0.95620 0.96441 1.21287 0.92190 0.99250 1.06557 1.18162 0.85666 0.92669 0.96528 1.43669 1.05320 1.30778 1.53962 1.18825 0.86406 0.83570 0.77949 1.90605 1.81453 1.25811 1.51351 1.21431 0.92286 1.09796 1.36462 0.88689 1.27070 1.06040 0.93685 0.92114 1.70173 1.36832 1.12733 1.24600 0.84879 0.74294 0.79569 0.78999 1.16640 1.19259 1.19339 1.20795 0.95099 0.95868 1.05403 0.88720 0.88172 0.85518 0.82863 0.81271 0.83380 0.75477 0.91260 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.15 113.37 1.04 -1.33 15 2 S -0.18 -6.21 22.56 -56.49 -1.27 -7.48 15 3 C -0.07 -2.82 6.11 22.61 0.14 -2.68 15 4 C -0.17 -4.82 9.37 22.46 0.21 -4.61 15 5 C -0.07 -1.90 10.03 22.23 0.22 -1.68 15 6 C -0.17 -5.54 9.97 22.46 0.22 -5.31 15 7 C 0.17 7.40 6.29 38.28 0.24 7.64 15 8 N -0.69 -32.61 5.31 -307.63 -1.63 -34.24 15 9 C 0.53 30.99 7.58 86.30 0.65 31.64 15 10 O -0.61 -41.16 12.44 -4.48 -0.06 -41.22 15 11 C -0.56 -31.74 9.53 24.78 0.24 -31.51 15 12 H 0.10 4.71 7.85 -2.91 -0.02 4.69 15 13 C 0.03 1.50 5.50 85.33 0.47 1.97 15 14 N -0.81 -49.91 11.82 21.85 0.26 -49.65 15 15 Si 1.00 40.45 29.56 68.60 2.03 42.48 15 16 H -0.24 -8.97 7.11 99.48 0.71 -8.26 15 17 H -0.27 -10.40 7.11 99.48 0.71 -9.70 15 18 H -0.27 -10.46 7.11 99.48 0.71 -9.76 15 19 C -0.15 -6.93 8.42 22.55 0.19 -6.74 15 20 H 0.09 1.59 7.75 -2.39 -0.02 1.57 15 21 H 0.10 1.55 7.75 -2.39 -0.02 1.53 15 22 H 0.13 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.15 3.19 5.87 -2.91 -0.02 3.17 15 24 H 0.17 2.85 8.06 -2.91 -0.02 2.82 15 25 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 26 H 0.41 15.95 8.80 -92.71 -0.82 15.13 15 27 H 0.28 15.33 8.29 -92.71 -0.77 14.56 15 28 H 0.09 5.50 6.23 -2.91 -0.02 5.48 15 Total: -1.00 -79.12 261.76 3.32 -75.80 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.37 Total: 26.92 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 3.62 Total: -12.61 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.38 Total: -83.89 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.06 Total: -41.22 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: -6.21 SS G_CDS: -1.27 Total: -7.48 kcal Total: -79.12 3.32 -75.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000467477.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.308 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds