Wall clock time and date at job start Sun Mar 29 2020 22:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38754 * 120.05449 * 359.72484 * 12 11 10 14 14 C 1.38115 * 119.94425 * 179.79159 * 13 12 11 15 15 C 1.38300 * 120.05459 * 0.48132 * 14 13 12 16 16 C 1.38241 * 120.10891 * 359.74513 * 15 14 13 17 17 N 1.48002 * 119.96786 * 179.97438 * 16 15 14 18 18 O 1.21803 * 119.99925 * 180.02562 * 17 16 15 19 19 O 1.21805 * 120.00092 * 0.02562 * 17 16 15 20 20 C 1.38163 * 120.05816 * 0.02709 * 16 15 14 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.08006 * 120.02588 * 0.02562 * 13 12 11 27 27 H 1.08000 * 119.97746 * 180.22805 * 14 13 12 28 28 H 1.08000 * 119.93996 * 179.77075 * 15 14 13 29 29 H 1.07998 * 120.02969 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6564 -5.9682 -0.0065 14 6 4.4064 -7.1280 -0.0028 15 6 3.7773 -8.3597 -0.0033 16 6 2.3968 -8.4332 -0.0023 17 7 1.7268 -9.7529 -0.0034 18 8 0.5106 -9.8184 -0.0030 19 8 2.3917 -10.7735 -0.0048 20 6 1.6421 -7.2759 -0.0012 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 4.1482 -5.0066 -0.0101 27 1 5.4850 -7.0732 -0.0035 28 1 4.3655 -9.2654 -0.0041 29 1 0.5637 -7.3340 -0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001750913.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:56 Heat of formation + Delta-G solvation = -27.542667 kcal Electronic energy + Delta-G solvation = -15623.496901 eV Core-core repulsion = 12708.152504 eV Total energy + Delta-G solvation = -2915.344397 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21734 -40.20414 -37.60707 -36.60046 -33.57067 -32.03244 -31.14986 -29.65246 -26.73829 -25.16574 -23.08254 -22.44081 -21.00069 -19.48141 -18.70254 -17.57691 -17.22675 -16.54943 -15.99464 -15.90215 -15.73761 -14.62086 -14.32508 -13.43391 -13.29674 -12.48925 -12.47674 -11.96862 -11.92044 -11.59577 -11.29555 -11.18322 -11.06284 -10.99869 -10.73572 -10.17507 -9.85833 -9.74323 -9.45094 -8.60233 -8.49655 -6.23036 -4.29050 -0.23256 0.93409 1.30638 1.32605 3.18052 3.22062 3.23373 3.27512 3.36394 4.28116 4.32696 4.57462 4.66088 4.77460 4.89134 5.13751 5.32652 5.59863 5.64012 5.73283 5.83560 5.94177 5.97716 6.36622 6.40957 7.21941 7.44712 7.52655 7.60070 7.77862 8.06606 8.76354 9.36367 10.88332 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.058574 B = 0.004171 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.913261 B = 6712.069617 C = 7169.536416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.061 3.939 11 O -0.304 6.304 12 C 0.152 3.848 13 C -0.163 4.163 14 C -0.076 4.076 15 C -0.109 4.109 16 C -0.007 4.007 17 N 0.030 4.970 18 O -0.158 6.158 19 O -0.163 6.163 20 C -0.103 4.103 21 H 0.264 0.736 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.151 0.849 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.324 -12.881 -0.008 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.013 4.013 11 O -0.216 6.216 12 C 0.103 3.897 13 C -0.182 4.182 14 C -0.094 4.094 15 C -0.128 4.128 16 C -0.090 4.090 17 N 0.550 4.450 18 O -0.375 6.375 19 O -0.379 6.379 20 C -0.122 4.122 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.168 0.832 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.274 -12.073 -0.008 14.636 hybrid contribution 0.434 0.703 -0.001 0.826 sum 8.708 -11.370 -0.008 14.321 Atomic orbital electron populations 1.69980 1.06132 1.27098 1.49242 1.25000 0.94932 0.99504 0.94720 0.86406 0.79895 0.83099 0.77842 1.19635 1.20746 1.20751 1.20950 0.93052 0.90011 1.52838 0.92242 1.19157 0.94127 0.88749 0.99194 1.23554 0.97489 0.80145 1.00083 1.86260 1.36261 1.12934 1.86170 1.18817 0.89898 0.87486 0.93455 1.21905 0.93152 1.00998 1.02115 1.20965 1.00761 0.90222 0.97502 1.20863 0.91259 1.00239 1.00457 1.20687 0.92936 0.82291 1.13055 1.43594 1.01112 1.02942 0.97374 1.94557 0.95845 1.93916 1.53139 1.94513 1.65394 1.24425 1.53535 1.20130 1.02342 0.88049 1.01726 0.92585 0.95173 0.95160 0.92527 0.92539 0.83186 0.83482 0.83217 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.69 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 7 C -0.53 -13.91 9.11 -34.44 -0.31 -14.22 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.02 0.60 5.34 -27.89 -0.15 0.46 15 10 C 0.06 1.14 4.68 37.16 0.17 1.31 15 11 O -0.30 -5.45 10.14 -19.43 -0.20 -5.64 15 12 C 0.15 2.23 6.69 -39.22 -0.26 1.97 15 13 C -0.16 -1.94 9.04 -39.44 -0.36 -2.29 15 14 C -0.08 -0.73 10.04 -39.60 -0.40 -1.12 15 15 C -0.11 -1.16 9.55 -39.56 -0.38 -1.54 15 16 C -0.01 -0.09 6.85 -79.98 -0.55 -0.64 15 17 N 0.03 0.44 4.45 33.95 0.15 0.59 15 18 O -0.16 -2.45 18.45 -29.46 -0.54 -3.00 15 19 O -0.16 -2.37 18.44 -29.46 -0.54 -2.91 15 20 C -0.10 -1.44 9.49 -39.43 -0.37 -1.81 15 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.06 0.98 7.68 -51.93 -0.40 0.58 15 25 H 0.06 0.98 7.65 -51.93 -0.40 0.58 15 26 H 0.15 1.63 6.30 -52.48 -0.33 1.30 15 27 H 0.15 0.91 8.06 -52.49 -0.42 0.49 15 28 H 0.15 1.31 7.61 -52.49 -0.40 0.91 15 29 H 0.16 2.19 7.61 -52.49 -0.40 1.79 15 LS Contribution 269.11 15.07 4.06 4.06 Total: -1.00 -28.98 269.11 -6.80 -35.78 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -2.73 Total: -3.20 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.70 Total: -16.34 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.89 Total: -24.09 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.28 Total: -11.55 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.98 -6.80 -35.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001750913.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.236 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds