Wall clock time and date at job start Sun Mar 29 2020 22:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38754 * 120.05449 * 359.72484 * 12 11 10 14 14 C 1.38115 * 119.94425 * 179.79159 * 13 12 11 15 15 C 1.38300 * 120.05459 * 0.48132 * 14 13 12 16 16 C 1.38241 * 120.10891 * 359.74513 * 15 14 13 17 17 N 1.48002 * 119.96786 * 179.97438 * 16 15 14 18 18 O 1.21803 * 119.99925 * 180.02562 * 17 16 15 19 19 O 1.21805 * 120.00092 * 0.02562 * 17 16 15 20 20 C 1.38163 * 120.05816 * 0.02709 * 16 15 14 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.08006 * 120.02588 * 0.02562 * 13 12 11 27 27 H 1.08000 * 119.97746 * 180.22805 * 14 13 12 28 28 H 1.08000 * 119.93996 * 179.77075 * 15 14 13 29 29 H 1.07998 * 120.02969 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6564 -5.9682 -0.0065 14 6 4.4064 -7.1280 -0.0028 15 6 3.7773 -8.3597 -0.0033 16 6 2.3968 -8.4332 -0.0023 17 7 1.7268 -9.7529 -0.0034 18 8 0.5106 -9.8184 -0.0030 19 8 2.3917 -10.7735 -0.0048 20 6 1.6421 -7.2759 -0.0012 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 4.1482 -5.0066 -0.0101 27 1 5.4850 -7.0732 -0.0035 28 1 4.3655 -9.2654 -0.0041 29 1 0.5637 -7.3340 -0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001750913.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:56 Heat of formation + Delta-G solvation = -43.848265 kcal Electronic energy + Delta-G solvation = -15624.203965 eV Core-core repulsion = 12708.152504 eV Total energy + Delta-G solvation = -2916.051461 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.32643 -41.32807 -38.77780 -37.74037 -35.50709 -33.01751 -32.68131 -31.02595 -27.86445 -26.91752 -24.12962 -23.76876 -22.49389 -20.62163 -19.82131 -18.76764 -18.69410 -17.86371 -17.31260 -17.10627 -17.06095 -16.42645 -15.17437 -14.70153 -14.59715 -14.36127 -13.59614 -13.41571 -13.14035 -12.83147 -12.77766 -12.66576 -12.44867 -12.35464 -12.21278 -11.76793 -11.63669 -11.40749 -10.67280 -10.64137 -9.61394 -8.27842 -6.41402 -1.30547 -0.00591 0.24989 0.26166 1.42191 1.42317 1.55474 2.06948 2.26407 2.42324 3.07790 3.43455 3.61837 3.70514 3.81090 3.97157 4.20581 4.24282 4.40320 4.66610 4.70778 4.91638 5.01886 5.02740 5.28079 5.39288 5.44537 5.68445 6.03020 6.25655 6.44328 6.74775 7.29487 8.85319 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.058574 B = 0.004171 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.913261 B = 6712.069617 C = 7169.536416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.078 3.922 11 O -0.333 6.333 12 C 0.124 3.876 13 C -0.153 4.153 14 C -0.057 4.057 15 C -0.090 4.090 16 C -0.021 4.021 17 N 0.031 4.969 18 O -0.205 6.205 19 O -0.142 6.142 20 C -0.117 4.117 21 H 0.266 0.734 22 H -0.002 1.002 23 H -0.002 1.002 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.166 0.834 27 H 0.197 0.803 28 H 0.179 0.821 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 -13.143 -0.011 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.095 0.905 9 C -0.013 4.013 10 C 0.005 3.995 11 O -0.247 6.247 12 C 0.077 3.923 13 C -0.172 4.172 14 C -0.075 4.075 15 C -0.109 4.109 16 C -0.104 4.104 17 N 0.547 4.453 18 O -0.411 6.411 19 O -0.365 6.365 20 C -0.137 4.137 21 H 0.075 0.925 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.184 0.816 27 H 0.214 0.786 28 H 0.196 0.804 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.033 -12.334 -0.011 17.232 hybrid contribution -0.648 0.634 0.000 0.906 sum 11.385 -11.701 -0.011 16.326 Atomic orbital electron populations 1.70132 1.08139 1.28131 1.50786 1.26050 0.95763 1.03786 0.94315 0.85248 0.79273 0.77983 0.77628 1.17670 1.20603 1.20614 1.21434 0.94042 0.90712 1.51768 0.90466 1.18998 0.94731 0.91503 0.96111 1.23107 0.95574 0.79044 1.01798 1.86160 1.37393 1.13592 1.87559 1.18960 0.91206 0.86151 0.95988 1.22192 0.91703 1.02853 1.00434 1.21484 1.02792 0.88408 0.94783 1.21361 0.89934 1.02060 0.97569 1.20829 0.93913 0.81029 1.14624 1.43814 1.01008 1.03482 0.96958 1.94574 0.96540 1.94233 1.55746 1.94471 1.65112 1.25008 1.51921 1.20051 1.02079 0.88661 1.02873 0.92547 0.98387 0.98375 0.90684 0.90689 0.81642 0.78641 0.80406 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.29 21.45 0.28 -54.76 15 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 15 3 Si 0.97 41.44 29.54 68.60 2.03 43.47 15 4 H -0.25 -9.91 7.11 99.48 0.71 -9.21 15 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 7 C -0.54 -28.41 9.11 25.60 0.23 -28.18 15 8 H 0.08 3.68 7.74 -2.91 -0.02 3.66 15 9 C 0.02 1.20 5.34 29.85 0.16 1.36 15 10 C 0.08 2.90 4.68 71.98 0.34 3.24 15 11 O -0.33 -12.20 10.14 -92.43 -0.94 -13.13 15 12 C 0.12 3.55 6.69 22.51 0.15 3.70 15 13 C -0.15 -3.12 9.04 22.36 0.20 -2.92 15 14 C -0.06 -0.79 10.04 22.26 0.22 -0.56 15 15 C -0.09 -1.55 9.55 22.29 0.21 -1.34 15 16 C -0.02 -0.53 6.85 36.36 0.25 -0.28 15 17 N 0.03 0.89 4.45 -46.51 -0.21 0.68 15 18 O -0.21 -6.64 18.45 18.88 0.35 -6.30 15 19 O -0.14 -3.85 18.44 18.88 0.35 -3.50 15 20 C -0.12 -3.31 9.49 22.37 0.21 -3.10 15 21 H 0.27 14.69 8.31 -92.71 -0.77 13.92 15 22 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 23 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 24 H 0.08 2.46 7.68 -2.39 -0.02 2.44 15 25 H 0.07 2.46 7.65 -2.39 -0.02 2.44 15 26 H 0.17 2.88 6.30 -2.91 -0.02 2.86 15 27 H 0.20 0.95 8.06 -2.91 -0.02 0.93 15 28 H 0.18 2.14 7.61 -2.91 -0.02 2.11 15 29 H 0.15 4.37 7.61 -2.91 -0.02 4.35 15 Total: -1.00 -65.56 269.11 5.47 -60.09 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.17 Total: 1.11 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 2.44 Total: -27.65 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.08 Total: -54.08 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.24 Total: -22.93 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -65.56 5.47 -60.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001750913.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.240 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds