Wall clock time and date at job start Sun Mar 29 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86791 * 120.00314 * 2 1 4 4 H 1.48499 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47101 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47344 * 59.99653 * 3 2 1 7 7 C 1.38748 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99872 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.76194 * 99.99945 * 179.97438 * 9 7 2 11 11 N 1.29019 * 124.82925 * 0.02898 * 10 9 7 12 12 C 1.34567 * 117.91285 * 179.97438 * 11 10 9 13 13 C 1.41215 * 128.74859 * 179.97438 * 12 11 10 14 14 C 1.37145 * 120.42634 * 180.02562 * 13 12 11 15 15 C 1.38766 * 120.62127 * 359.97438 * 14 13 12 16 16 C 1.37702 * 120.00621 * 359.97438 * 15 14 13 17 17 C 1.39287 * 120.20009 * 0.02896 * 16 15 14 18 18 S 1.75816 * 124.82470 * 179.97438 * 10 9 7 19 19 H 0.97006 * 119.99924 * 359.97438 * 1 2 3 20 20 H 1.07999 * 119.78760 * 359.97438 * 13 12 11 21 21 H 1.08001 * 119.68812 * 179.69698 * 14 13 12 22 22 H 1.08004 * 119.99768 * 180.02562 * 15 14 13 23 23 H 1.07997 * 119.90604 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8912 2.3963 -1.2126 6 1 1.8911 2.3964 1.2125 7 6 2.0094 -1.2016 0.0005 8 1 3.0895 -1.2017 0.0001 9 16 1.1284 -2.7276 0.0005 10 6 2.4781 -3.8601 0.0005 11 7 3.7233 -3.5225 0.0011 12 6 4.6425 -4.5053 0.0015 13 6 6.0506 -4.3986 0.0016 14 6 6.8325 -5.5253 0.0016 15 6 6.2545 -6.7868 0.0020 16 6 4.8836 -6.9161 0.0029 17 6 4.0730 -5.7834 0.0029 18 16 2.3195 -5.6111 0.0012 19 1 -0.4850 0.8401 0.0004 20 1 6.5148 -3.4235 0.0009 21 1 7.9083 -5.4298 -0.0033 22 1 6.8799 -7.6674 0.0023 23 1 4.4354 -7.8987 0.0036 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002148847.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:10 Heat of formation + Delta-G solvation = 40.693083 kcal Electronic energy + Delta-G solvation = -11506.773119 eV Core-core repulsion = 9344.060294 eV Total energy + Delta-G solvation = -2162.712826 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 236.998 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.46256 -36.00554 -32.87171 -30.63636 -29.26319 -25.87243 -24.30984 -22.55553 -20.86185 -18.54846 -17.47353 -16.23346 -15.52536 -15.09533 -14.82618 -14.09556 -13.93906 -13.51522 -12.96514 -12.12639 -11.66894 -11.63912 -11.40184 -11.23664 -11.11541 -10.42391 -10.29686 -9.62057 -9.52879 -9.15481 -8.75068 -8.58886 -7.66694 -6.91310 -6.65606 -4.35837 0.93993 1.52647 1.75831 2.29213 2.83138 2.86188 3.09612 3.13944 3.23598 3.87163 4.17527 4.79067 4.80857 5.03058 5.10966 5.27100 5.56617 5.73774 5.89409 6.26804 6.49759 6.68517 6.71226 7.10595 7.40241 8.22619 8.39046 8.86481 10.41542 Molecular weight = 237.00amu Principal moments of inertia in cm(-1) A = 0.037942 B = 0.007404 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.781941 B = 3780.593288 C = 4508.533228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.076 3.924 3 Si 0.935 3.065 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.110 0.890 9 S 0.189 5.811 10 C 0.095 3.905 11 N -0.500 5.500 12 C 0.126 3.874 13 C -0.093 4.093 14 C -0.104 4.104 15 C -0.141 4.141 16 C -0.062 4.062 17 C -0.195 4.195 18 S 0.013 5.987 19 H 0.278 0.722 20 H 0.126 0.874 21 H 0.124 0.876 22 H 0.124 0.876 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.216 -9.034 -0.002 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.687 4.687 8 H 0.128 0.872 9 S 0.431 5.569 10 C -0.292 4.292 11 N -0.222 5.222 12 C 0.000 4.000 13 C -0.116 4.116 14 C -0.125 4.125 15 C -0.164 4.164 16 C -0.085 4.085 17 C -0.317 4.317 18 S 0.263 5.737 19 H 0.088 0.912 20 H 0.144 0.856 21 H 0.142 0.858 22 H 0.142 0.858 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.841 -9.052 -0.003 10.265 hybrid contribution 2.590 1.232 0.000 2.868 sum 7.431 -7.820 -0.003 10.787 Atomic orbital electron populations 1.69935 1.06234 1.28907 1.45037 1.25204 0.95234 1.00069 0.92979 0.85829 0.80108 0.79961 0.78141 1.18798 1.20129 1.20133 1.23545 0.97718 0.89508 1.57967 0.87177 1.83614 0.98883 0.96058 1.78364 1.30202 1.00426 0.97638 1.00953 1.66864 0.98822 1.32133 1.24386 1.19489 0.94756 0.86570 0.99171 1.20592 0.89755 0.99172 1.02082 1.20775 0.99378 0.92058 1.00330 1.20834 0.93823 0.97360 1.04361 1.20189 0.92925 0.95801 0.99591 1.23549 0.96260 0.98360 1.13565 1.84551 1.02107 1.07023 1.79992 0.91241 0.85565 0.85761 0.85811 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.51 13.22 55.49 0.73 -22.78 14 2 C 0.08 2.01 5.49 -17.47 -0.10 1.91 14 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 14 4 H -0.26 -5.82 7.11 56.52 0.40 -5.42 14 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 14 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 14 7 C -0.54 -14.64 9.34 30.92 0.29 -14.35 14 8 H 0.11 3.08 6.85 -52.48 -0.36 2.72 14 9 S 0.19 4.68 21.89 -107.50 -2.35 2.33 14 10 C 0.09 2.19 7.62 51.58 0.39 2.59 14 11 N -0.50 -11.96 9.23 -10.57 -0.10 -12.05 14 12 C 0.13 2.63 6.94 -84.91 -0.59 2.04 14 13 C -0.09 -1.60 10.10 -38.85 -0.39 -1.99 14 14 C -0.10 -1.43 9.99 -39.78 -0.40 -1.83 14 15 C -0.14 -1.85 10.05 -39.58 -0.40 -2.25 14 16 C -0.06 -0.94 10.06 -39.39 -0.40 -1.33 14 17 C -0.20 -3.69 6.53 -38.56 -0.25 -3.94 14 18 S 0.01 0.25 23.38 -107.50 -2.51 -2.26 14 19 H 0.28 6.95 8.31 -40.82 -0.34 6.61 14 20 H 0.13 2.04 8.06 -52.49 -0.42 1.61 14 21 H 0.12 1.29 8.06 -52.49 -0.42 0.87 14 22 H 0.12 1.21 8.06 -52.48 -0.42 0.79 14 23 H 0.12 1.51 8.06 -52.49 -0.42 1.08 14 LS Contribution 242.10 15.07 3.65 3.65 Total: -1.00 -28.88 242.10 -8.63 -37.51 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -1.19 Total: -2.75 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.84 Total: -19.16 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.64 Total: -34.83 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -4.87 Total: 0.06 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.88 -8.63 -37.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002148847.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.204 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds