Wall clock time and date at job start Sun Mar 29 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86791 * 120.00314 * 2 1 4 4 H 1.48499 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47101 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47344 * 59.99653 * 3 2 1 7 7 C 1.38748 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99872 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.76194 * 99.99945 * 179.97438 * 9 7 2 11 11 N 1.29019 * 124.82925 * 0.02898 * 10 9 7 12 12 C 1.34567 * 117.91285 * 179.97438 * 11 10 9 13 13 C 1.41215 * 128.74859 * 179.97438 * 12 11 10 14 14 C 1.37145 * 120.42634 * 180.02562 * 13 12 11 15 15 C 1.38766 * 120.62127 * 359.97438 * 14 13 12 16 16 C 1.37702 * 120.00621 * 359.97438 * 15 14 13 17 17 C 1.39287 * 120.20009 * 0.02896 * 16 15 14 18 18 S 1.75816 * 124.82470 * 179.97438 * 10 9 7 19 19 H 0.97006 * 119.99924 * 359.97438 * 1 2 3 20 20 H 1.07999 * 119.78760 * 359.97438 * 13 12 11 21 21 H 1.08001 * 119.68812 * 179.69698 * 14 13 12 22 22 H 1.08004 * 119.99768 * 180.02562 * 15 14 13 23 23 H 1.07997 * 119.90604 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8912 2.3963 -1.2126 6 1 1.8911 2.3964 1.2125 7 6 2.0094 -1.2016 0.0005 8 1 3.0895 -1.2017 0.0001 9 16 1.1284 -2.7276 0.0005 10 6 2.4781 -3.8601 0.0005 11 7 3.7233 -3.5225 0.0011 12 6 4.6425 -4.5053 0.0015 13 6 6.0506 -4.3986 0.0016 14 6 6.8325 -5.5253 0.0016 15 6 6.2545 -6.7868 0.0020 16 6 4.8836 -6.9161 0.0029 17 6 4.0730 -5.7834 0.0029 18 16 2.3195 -5.6111 0.0012 19 1 -0.4850 0.8401 0.0004 20 1 6.5148 -3.4235 0.0009 21 1 7.9083 -5.4298 -0.0033 22 1 6.8799 -7.6674 0.0023 23 1 4.4354 -7.8987 0.0036 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002148847.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:10 Heat of formation + Delta-G solvation = 23.028578 kcal Electronic energy + Delta-G solvation = -11507.539110 eV Core-core repulsion = 9344.060294 eV Total energy + Delta-G solvation = -2163.478816 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 236.998 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.92256 -37.46781 -34.83657 -31.91803 -30.68592 -27.86450 -25.86777 -23.87972 -22.30093 -20.31679 -19.05928 -17.75540 -17.04647 -16.98078 -16.15548 -15.69959 -15.46027 -14.87644 -14.62014 -13.59936 -13.22111 -13.16547 -13.08216 -12.89172 -12.68565 -12.08006 -11.78553 -11.36899 -11.09797 -11.03046 -10.43752 -10.13478 -9.08595 -8.70692 -8.59639 -6.37426 -0.53834 0.14337 0.24993 0.73830 1.11501 1.32853 1.33732 1.44096 1.50858 2.07139 2.79007 2.84528 2.96115 3.54623 3.84735 4.16359 4.39241 4.43569 4.69658 5.00571 5.26447 5.33690 5.41572 5.48279 5.90394 6.16562 6.75333 6.87748 8.49800 Molecular weight = 237.00amu Principal moments of inertia in cm(-1) A = 0.037942 B = 0.007404 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.781941 B = 3780.593288 C = 4508.533228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.030 3.970 3 Si 1.000 3.000 4 H -0.270 1.270 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.090 0.910 9 S 0.129 5.871 10 C 0.073 3.927 11 N -0.522 5.522 12 C 0.068 3.932 13 C -0.104 4.104 14 C -0.090 4.090 15 C -0.107 4.107 16 C -0.071 4.071 17 C -0.204 4.204 18 S 0.058 5.942 19 H 0.283 0.717 20 H 0.127 0.873 21 H 0.170 0.830 22 H 0.177 0.823 23 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.368 -11.451 -0.002 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.709 4.709 8 H 0.109 0.891 9 S 0.368 5.632 10 C -0.316 4.316 11 N -0.243 5.243 12 C -0.055 4.055 13 C -0.127 4.127 14 C -0.111 4.111 15 C -0.129 4.129 16 C -0.094 4.094 17 C -0.326 4.326 18 S 0.308 5.692 19 H 0.092 0.908 20 H 0.145 0.855 21 H 0.188 0.812 22 H 0.194 0.806 23 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.056 -11.519 -0.004 14.056 hybrid contribution 2.001 1.556 0.001 2.535 sum 10.057 -9.963 -0.003 14.156 Atomic orbital electron populations 1.70005 1.07369 1.29877 1.46213 1.26070 0.96114 1.03062 0.92430 0.84890 0.78183 0.75964 0.78893 1.19475 1.18858 1.18866 1.23507 0.96896 0.91005 1.59501 0.89150 1.83393 1.00627 0.96451 1.82724 1.29910 0.99846 0.99566 1.02265 1.66811 0.99802 1.34918 1.22780 1.19899 0.95907 0.86815 1.02924 1.20935 0.88586 1.01019 1.02162 1.21350 1.01361 0.91003 0.97340 1.21545 0.93325 0.98896 0.99173 1.20726 0.93767 0.95839 0.99103 1.23939 0.96067 0.99088 1.13483 1.84219 1.03004 1.03102 1.78855 0.90751 0.85492 0.81243 0.80576 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.85 13.22 21.64 0.29 -50.56 14 2 C 0.03 1.67 5.49 84.85 0.47 2.13 14 3 Si 1.00 43.46 29.55 68.60 2.03 45.49 14 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 14 5 H -0.26 -10.84 7.11 99.48 0.71 -10.14 14 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 14 7 C -0.56 -32.35 9.34 67.94 0.63 -31.72 14 8 H 0.09 5.40 6.85 -2.91 -0.02 5.38 14 9 S 0.13 6.84 21.89 -56.49 -1.24 5.61 14 10 C 0.07 3.54 7.62 130.66 1.00 4.54 14 11 N -0.52 -25.85 9.23 -187.35 -1.73 -27.57 14 12 C 0.07 2.79 6.94 39.86 0.28 3.07 14 13 C -0.10 -3.36 10.10 22.74 0.23 -3.13 14 14 C -0.09 -1.98 9.99 22.14 0.22 -1.76 14 15 C -0.11 -2.10 10.05 22.27 0.22 -1.87 14 16 C -0.07 -1.82 10.06 22.40 0.23 -1.59 14 17 C -0.20 -7.33 6.53 22.93 0.15 -7.18 14 18 S 0.06 2.21 23.38 -56.49 -1.32 0.89 14 19 H 0.28 14.64 8.31 -92.70 -0.77 13.87 14 20 H 0.13 3.96 8.06 -2.91 -0.02 3.94 14 21 H 0.17 2.29 8.06 -2.91 -0.02 2.26 14 22 H 0.18 1.81 8.06 -2.91 -0.02 1.78 14 23 H 0.15 2.93 8.06 -2.91 -0.02 2.90 14 Total: -1.00 -67.62 242.10 2.69 -64.94 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 1.24 Total: -1.27 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 3.42 Total: -37.52 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -1.44 Total: -78.14 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 9.05 SS G_CDS: -2.56 Total: 6.49 kcal Total: -67.62 2.69 -64.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002148847.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.964 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds