Wall clock time and date at job start Sun Mar 29 2020 22:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21293 * 120.00471 * 2 1 4 4 N 1.34774 * 119.99721 * 180.02562 * 2 1 3 5 5 C 1.39965 * 119.99951 * 175.38198 * 4 2 1 6 6 C 1.38964 * 119.98055 * 35.10547 * 5 4 2 7 7 C 1.37931 * 120.02584 * 179.97438 * 6 5 4 8 8 C 1.39147 * 119.97601 * 359.97438 * 7 6 5 9 9 S 1.76191 * 120.02188 * 179.97438 * 8 7 6 10 10 C 1.76196 * 100.00414 * 94.98810 * 9 8 7 11 11 H 1.08005 * 119.99932 * 355.00488 * 10 9 8 12 12 C 1.38681 * 120.00380 * 174.99667 * 10 9 8 13 13 N 1.31655 * 119.99475 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00129 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.46931 * 90.00498 * 14 12 10 16 16 H 1.48501 * 109.47413 * 209.99832 * 14 12 10 17 17 H 1.48502 * 109.47424 * 330.00542 * 14 12 10 18 18 C 1.39138 * 119.95614 * 0.25046 * 8 7 6 19 19 C 1.37938 * 119.98250 * 359.51972 * 18 8 7 20 20 H 1.08997 * 109.46848 * 269.99713 * 1 2 3 21 21 H 1.09008 * 109.46845 * 29.98869 * 1 2 3 22 22 H 1.08994 * 109.47263 * 149.98990 * 1 2 3 23 23 H 0.97003 * 120.00227 * 355.38501 * 4 2 1 24 24 H 1.07998 * 119.98582 * 359.97438 * 6 5 4 25 25 H 1.07996 * 120.01467 * 179.97438 * 7 6 5 26 26 H 0.97006 * 119.99541 * 179.97438 * 13 12 10 27 27 H 1.08005 * 120.01323 * 179.72302 * 18 8 7 28 28 H 1.08001 * 119.98981 * 180.20632 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5771 -1.1692 -0.0981 6 6 4.3167 -0.1587 0.5043 7 6 5.6927 -0.1600 0.4091 8 6 6.3403 -1.1740 -0.2899 9 16 8.0979 -1.1765 -0.4128 10 6 8.4974 -2.2395 0.9344 11 1 7.7168 -2.5987 1.5887 12 6 9.8141 -2.6151 1.1546 13 7 10.7657 -2.1769 0.3572 14 14 10.2375 -3.7426 2.5825 15 1 10.1700 -5.1566 2.1334 16 1 11.6102 -3.4405 3.0617 17 1 9.2688 -3.5274 3.6873 18 6 5.5986 -2.1828 -0.8967 19 6 4.2229 -2.1824 -0.7964 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8902 -0.5137 22 1 -0.3633 -0.8898 -0.5140 23 1 1.6982 -2.0059 0.0667 24 1 3.8139 0.6280 1.0471 25 1 6.2673 0.6257 0.8770 26 1 11.6868 -2.4393 0.5115 27 1 6.1001 -2.9678 -1.4432 28 1 3.6473 -2.9672 -1.2645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002562010.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:12 Heat of formation + Delta-G solvation = -16.910551 kcal Electronic energy + Delta-G solvation = -13657.208700 eV Core-core repulsion = 11185.078216 eV Total energy + Delta-G solvation = -2472.130483 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30202 -37.93676 -34.60335 -32.46689 -30.79897 -30.46179 -28.24396 -25.51460 -22.74993 -22.12893 -20.35815 -17.88611 -17.61078 -16.88220 -16.00107 -15.49023 -14.82129 -14.30535 -14.15530 -13.61977 -13.17801 -12.95646 -12.94604 -12.62750 -12.21404 -12.02656 -11.22415 -11.07857 -10.89416 -10.72564 -10.22377 -10.00247 -9.56098 -9.11785 -8.65593 -8.42787 -7.56040 -6.64144 -6.24160 -3.97350 1.56249 1.94102 2.55641 3.07935 3.21335 3.22880 3.29133 3.56887 4.13910 4.31650 4.59734 4.92344 5.10534 5.11056 5.30765 5.44223 5.52260 5.55222 5.85201 5.96795 6.03220 6.41974 6.57128 6.65743 6.86177 7.14429 7.39846 7.44190 7.61099 8.07768 8.36873 9.20852 10.82083 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.049351 B = 0.005280 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.222936 B = 5301.318727 C = 5450.153404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.527 6.527 4 N -0.672 5.672 5 C 0.129 3.871 6 C -0.130 4.130 7 C -0.067 4.067 8 C -0.107 4.107 9 S -0.043 6.043 10 C -0.516 4.516 11 H 0.075 0.925 12 C 0.071 3.929 13 N -0.872 5.872 14 Si 0.920 3.080 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.066 4.066 19 C -0.155 4.155 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.407 0.593 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.269 0.731 27 H 0.130 0.870 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 -0.528 -0.465 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.293 3.707 3 O -0.403 6.403 4 N -0.317 5.317 5 C 0.035 3.965 6 C -0.152 4.152 7 C -0.089 4.089 8 C -0.219 4.219 9 S 0.191 5.809 10 C -0.663 4.663 11 H 0.093 0.907 12 C -0.138 4.138 13 N -0.507 5.507 14 Si 0.747 3.253 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.088 4.088 19 C -0.177 4.177 20 H 0.113 0.887 21 H 0.114 0.886 22 H 0.099 0.901 23 H 0.243 0.757 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.643 0.793 -1.263 16.710 hybrid contribution -0.852 -1.853 1.707 2.659 sum -17.495 -1.060 0.444 17.533 Atomic orbital electron populations 1.21880 0.91117 1.05080 1.04894 1.20963 0.90716 0.83388 0.75619 1.90749 1.70371 1.31312 1.47835 1.43583 1.05638 1.09528 1.72964 1.17759 0.81716 0.97864 0.99117 1.21206 0.93837 0.99303 1.00818 1.21632 0.93172 0.97862 0.96212 1.22796 1.03023 0.96440 0.99594 1.83547 0.89190 1.64210 1.43930 1.22834 0.95769 1.33933 1.13786 0.90713 1.25000 0.95273 0.96255 0.97225 1.70015 1.00797 1.43039 1.36889 0.86130 0.77829 0.80173 0.81213 1.20244 1.20726 1.19629 1.21537 0.92281 0.97634 0.97315 1.20836 0.95151 0.99827 1.01886 0.88700 0.88622 0.90055 0.75725 0.85012 0.85313 0.92166 0.85248 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.31 36.01 0.37 -0.75 15 2 C 0.51 6.13 7.78 -10.99 -0.09 6.04 15 3 O -0.53 -8.92 14.53 5.55 0.08 -8.84 15 4 N -0.67 -7.91 5.34 -9.81 -0.05 -7.96 15 5 C 0.13 2.08 6.30 -83.60 -0.53 1.55 15 6 C -0.13 -2.40 8.69 -39.42 -0.34 -2.74 15 7 C -0.07 -1.39 9.79 -39.36 -0.39 -1.77 15 8 C -0.11 -2.39 5.46 -38.91 -0.21 -2.60 15 9 S -0.04 -1.14 21.40 -107.50 -2.30 -3.44 15 10 C -0.52 -14.70 9.46 30.90 0.29 -14.41 15 11 H 0.07 2.11 7.79 -52.48 -0.41 1.70 15 12 C 0.07 2.01 5.49 -17.46 -0.10 1.91 15 13 N -0.87 -25.71 13.22 55.48 0.73 -24.98 15 14 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 15 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 15 18 C -0.07 -1.29 9.79 -39.36 -0.39 -1.68 15 19 C -0.16 -2.49 9.96 -39.42 -0.39 -2.88 15 20 H 0.09 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.09 0.63 8.14 -51.92 -0.42 0.20 15 22 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 15 23 H 0.41 3.17 8.82 -40.82 -0.36 2.81 15 24 H 0.13 2.41 6.22 -52.49 -0.33 2.08 15 25 H 0.13 2.58 8.06 -52.49 -0.42 2.16 15 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 27 H 0.13 2.44 8.06 -52.48 -0.42 2.02 15 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 LS Contribution 268.13 15.07 4.04 4.04 Total: -1.00 -33.74 268.13 -7.05 -40.79 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -2.77 Total: 1.25 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.76 Total: -17.33 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.68 Total: -32.94 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.30 Total: -3.44 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.74 -7.05 -40.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002562010.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.878 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds