Wall clock time and date at job start Sun Mar 29 2020 22:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46792 * 241.60836 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99658 * 90.00442 * 5 4 3 7 7 C 1.50701 * 109.47310 * 89.99973 * 6 5 4 8 8 H 1.07997 * 119.99940 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99860 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47093 * 60.00167 * 11 9 7 13 13 H 1.48503 * 109.47145 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47483 * 300.00005 * 11 9 7 15 15 C 1.38606 * 120.00615 * 270.00114 * 5 4 3 16 16 N 1.29693 * 124.94195 * 359.69884 * 15 5 4 17 17 C 1.32122 * 116.85918 * 179.81564 * 16 15 5 18 18 C 1.33320 * 114.58580 * 0.47056 * 17 16 15 19 19 S 1.70963 * 124.95496 * 180.02562 * 15 5 4 20 20 H 1.09001 * 109.46765 * 121.61169 * 3 2 1 21 21 H 1.08992 * 109.47494 * 1.61201 * 3 2 1 22 22 H 1.09002 * 109.47398 * 300.00415 * 4 3 2 23 23 H 1.09001 * 109.47194 * 60.00595 * 4 3 2 24 24 H 1.08998 * 109.46888 * 209.99779 * 6 5 4 25 25 H 1.08994 * 109.47490 * 329.99842 * 6 5 4 26 26 H 0.97000 * 119.99433 * 179.97438 * 10 9 7 27 27 H 1.08006 * 122.70572 * 180.22301 * 17 16 15 28 28 H 1.07993 * 125.95473 * 179.75841 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6868 1.2690 5 7 4.5826 0.6880 1.2687 6 6 5.3140 1.8049 0.6655 7 6 5.5645 2.8632 1.7088 8 1 5.2136 2.7186 2.7198 9 6 6.2416 4.0162 1.3724 10 7 6.6694 4.1921 0.1412 11 14 6.5515 5.3283 2.6654 12 1 7.3539 4.7514 3.7737 13 1 7.2941 6.4599 2.0543 14 1 5.2535 5.8166 3.1961 15 6 5.2767 -0.3674 1.8392 16 7 4.7285 -1.3989 2.4027 17 6 5.5444 -2.3154 2.8926 18 6 6.8405 -2.0405 2.7443 19 16 6.9801 -0.4955 1.9095 20 1 2.9710 0.5395 -0.8752 21 1 2.9718 -1.0263 -0.0289 22 1 2.7537 1.7139 1.2979 23 1 2.7546 0.1480 2.1442 24 1 6.2666 1.4468 0.2753 25 1 4.7245 2.2285 -0.1474 26 1 7.1455 5.0035 -0.0954 27 1 5.1899 -3.2128 3.3779 28 1 7.6617 -2.6574 3.0780 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003163622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:46 Heat of formation + Delta-G solvation = 73.490132 kcal Electronic energy + Delta-G solvation = -14028.718444 eV Core-core repulsion = 11592.800780 eV Total energy + Delta-G solvation = -2435.917664 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.05699 -37.07076 -35.93694 -32.97625 -31.28484 -29.14898 -26.93561 -24.76436 -23.62866 -21.54193 -19.13940 -17.71489 -17.36634 -16.54045 -15.64686 -15.03194 -14.68547 -14.28243 -14.18256 -13.72901 -13.33468 -12.74991 -12.51250 -12.23109 -12.12867 -11.75706 -11.58589 -11.09821 -10.91031 -10.67249 -10.54914 -10.27342 -10.08933 -9.25187 -8.96361 -8.65827 -8.52975 -6.95326 -6.23210 -4.34020 1.65639 1.88197 2.55510 2.88060 2.94867 3.22172 3.27081 3.29729 3.56381 3.61894 4.27510 4.32721 5.07327 5.18348 5.28141 5.33079 5.67483 5.78718 5.97738 6.12140 6.23624 6.48842 6.84933 6.97110 7.44892 7.70046 7.72388 7.87914 7.91747 8.52106 8.74438 9.34265 10.80732 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.009823 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.456396 B = 2849.689838 C = 4189.832442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.222 3.778 3 C -0.046 4.046 4 C 0.142 3.858 5 N -0.559 5.559 6 C 0.248 3.752 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.069 3.931 10 N -0.890 5.890 11 Si 0.898 3.102 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.335 3.665 16 N -0.581 5.581 17 C 0.085 3.915 18 C -0.343 4.343 19 S 0.118 5.882 20 H 0.111 0.889 21 H 0.109 0.891 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.267 0.733 27 H 0.160 0.840 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 -8.294 1.056 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.096 4.096 3 C -0.088 4.088 4 C 0.014 3.986 5 N -0.274 5.274 6 C 0.129 3.871 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.135 4.135 10 N -0.528 5.528 11 Si 0.725 3.275 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.201 1.201 15 C -0.035 4.035 16 N -0.309 5.309 17 C -0.066 4.066 18 C -0.485 4.485 19 S 0.368 5.632 20 H 0.129 0.871 21 H 0.127 0.873 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.177 0.823 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.056 -7.373 0.514 7.466 hybrid contribution 0.421 -0.014 1.103 1.181 sum -0.635 -7.387 1.617 7.588 Atomic orbital electron populations 1.81174 1.13081 1.09505 1.09085 1.29102 0.95101 0.92593 0.92790 1.19831 0.81264 1.05031 1.02697 1.21153 0.80268 1.01517 0.95708 1.46684 1.04184 1.18200 1.58294 1.19587 0.91881 0.81882 0.93764 1.21423 1.37643 1.02321 0.96732 0.91881 1.24908 0.94936 0.98094 0.95578 1.69898 1.37600 1.27616 1.17677 0.86542 0.78605 0.80788 0.81531 1.19939 1.21076 1.20072 1.23709 0.93534 0.91308 0.94933 1.66501 1.37661 1.04289 1.22466 1.21176 0.88520 0.98007 0.98945 1.26422 1.01082 1.03691 1.17353 1.84387 1.04360 1.17153 1.57342 0.87119 0.87322 0.89235 0.89806 0.94277 0.93451 0.92290 0.82264 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.44 18.54 42.15 0.78 -6.66 15 2 C 0.22 3.15 15.43 -20.76 -0.32 2.83 15 3 C -0.05 -0.59 6.03 -29.52 -0.18 -0.77 15 4 C 0.14 2.21 5.48 -4.04 -0.02 2.19 15 5 N -0.56 -10.42 2.56 -177.40 -0.45 -10.87 15 6 C 0.25 5.40 5.13 -5.19 -0.03 5.37 15 7 C -0.54 -13.40 9.39 -34.44 -0.32 -13.72 15 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 15 9 C 0.07 1.74 5.46 -17.82 -0.10 1.65 15 10 N -0.89 -23.56 13.29 55.43 0.74 -22.82 15 11 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 15 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 13 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 15 C 0.33 6.25 7.74 -87.68 -0.68 5.57 15 16 N -0.58 -10.34 9.81 -15.21 -0.15 -10.49 15 17 C 0.09 1.32 11.34 -19.14 -0.22 1.10 15 18 C -0.34 -5.17 11.34 29.01 0.33 -4.84 15 19 S 0.12 2.10 21.69 -107.50 -2.33 -0.23 15 20 H 0.11 1.29 8.14 -51.93 -0.42 0.87 15 21 H 0.11 1.33 8.14 -51.93 -0.42 0.91 15 22 H 0.09 1.41 8.07 -51.93 -0.42 0.99 15 23 H 0.08 1.33 7.61 -51.93 -0.40 0.93 15 24 H 0.04 0.91 7.04 -51.93 -0.37 0.54 15 25 H 0.05 1.05 8.07 -51.93 -0.42 0.63 15 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 27 H 0.16 1.95 8.06 -52.48 -0.42 1.53 15 28 H 0.16 1.96 8.06 -52.49 -0.42 1.54 15 LS Contribution 273.40 15.07 4.12 4.12 Total: -1.00 -27.64 273.40 -6.69 -34.33 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -2.84 Total: -1.79 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.53 Total: -0.62 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.91 Total: -50.84 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.33 Total: -0.23 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.64 -6.69 -34.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003163622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.820 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds