Wall clock time and date at job start Sun Mar 29 2020 22:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46792 * 241.60836 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99658 * 90.00442 * 5 4 3 7 7 C 1.50701 * 109.47310 * 89.99973 * 6 5 4 8 8 H 1.07997 * 119.99940 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99860 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47093 * 60.00167 * 11 9 7 13 13 H 1.48503 * 109.47145 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47483 * 300.00005 * 11 9 7 15 15 C 1.38606 * 120.00615 * 270.00114 * 5 4 3 16 16 N 1.29693 * 124.94195 * 359.69884 * 15 5 4 17 17 C 1.32122 * 116.85918 * 179.81564 * 16 15 5 18 18 C 1.33320 * 114.58580 * 0.47056 * 17 16 15 19 19 S 1.70963 * 124.95496 * 180.02562 * 15 5 4 20 20 H 1.09001 * 109.46765 * 121.61169 * 3 2 1 21 21 H 1.08992 * 109.47494 * 1.61201 * 3 2 1 22 22 H 1.09002 * 109.47398 * 300.00415 * 4 3 2 23 23 H 1.09001 * 109.47194 * 60.00595 * 4 3 2 24 24 H 1.08998 * 109.46888 * 209.99779 * 6 5 4 25 25 H 1.08994 * 109.47490 * 329.99842 * 6 5 4 26 26 H 0.97000 * 119.99433 * 179.97438 * 10 9 7 27 27 H 1.08006 * 122.70572 * 180.22301 * 17 16 15 28 28 H 1.07993 * 125.95473 * 179.75841 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6868 1.2690 5 7 4.5826 0.6880 1.2687 6 6 5.3140 1.8049 0.6655 7 6 5.5645 2.8632 1.7088 8 1 5.2136 2.7186 2.7198 9 6 6.2416 4.0162 1.3724 10 7 6.6694 4.1921 0.1412 11 14 6.5515 5.3283 2.6654 12 1 7.3539 4.7514 3.7737 13 1 7.2941 6.4599 2.0543 14 1 5.2535 5.8166 3.1961 15 6 5.2767 -0.3674 1.8392 16 7 4.7285 -1.3989 2.4027 17 6 5.5444 -2.3154 2.8926 18 6 6.8405 -2.0405 2.7443 19 16 6.9801 -0.4955 1.9095 20 1 2.9710 0.5395 -0.8752 21 1 2.9718 -1.0263 -0.0289 22 1 2.7537 1.7139 1.2979 23 1 2.7546 0.1480 2.1442 24 1 6.2666 1.4468 0.2753 25 1 4.7245 2.2285 -0.1474 26 1 7.1455 5.0035 -0.0954 27 1 5.1899 -3.2128 3.3779 28 1 7.6617 -2.6574 3.0780 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003163622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:46 Heat of formation + Delta-G solvation = 58.813343 kcal Electronic energy + Delta-G solvation = -14029.354878 eV Core-core repulsion = 11592.800780 eV Total energy + Delta-G solvation = -2436.554098 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.38817 -38.36197 -37.28481 -34.80514 -32.58904 -30.59785 -28.54598 -26.04589 -25.29095 -22.98222 -20.43160 -19.14683 -18.67467 -18.27726 -16.99190 -16.64015 -16.01978 -15.66819 -15.49897 -15.11656 -14.59649 -14.33441 -13.93118 -13.64192 -13.37503 -13.30987 -13.04606 -12.74910 -12.61203 -12.16481 -11.91052 -11.81101 -11.77624 -10.73777 -10.59215 -10.31490 -9.93451 -8.45930 -8.05394 -6.31746 0.34012 0.54037 1.26830 1.44452 1.46131 1.52598 1.69120 1.79605 2.18717 2.29466 2.45501 3.11541 3.15368 3.93691 4.11462 4.15731 4.56325 4.70844 4.79993 4.88599 5.03134 5.03796 5.20826 5.50077 5.67381 6.00693 6.07711 6.43262 6.56954 6.77116 7.20842 7.40265 8.86573 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.009823 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.456396 B = 2849.689838 C = 4189.832442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.142 3.858 5 N -0.565 5.565 6 C 0.263 3.737 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.027 3.973 10 N -0.917 5.917 11 Si 0.949 3.051 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.319 3.681 16 N -0.585 5.585 17 C 0.072 3.928 18 C -0.320 4.320 19 S 0.076 5.924 20 H 0.126 0.874 21 H 0.120 0.880 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.025 0.975 25 H 0.043 0.957 26 H 0.268 0.732 27 H 0.195 0.805 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -9.347 1.770 9.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.072 4.072 4 C 0.015 3.985 5 N -0.281 5.281 6 C 0.143 3.857 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.174 4.174 10 N -0.556 5.556 11 Si 0.775 3.225 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.198 1.198 15 C -0.050 4.050 16 N -0.313 5.313 17 C -0.078 4.078 18 C -0.461 4.461 19 S 0.324 5.676 20 H 0.144 0.856 21 H 0.138 0.862 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.212 0.788 28 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.894 -8.461 1.248 8.599 hybrid contribution 0.407 0.209 0.943 1.049 sum -0.486 -8.252 2.192 8.552 Atomic orbital electron populations 1.81202 1.14251 1.10924 1.10369 1.29184 0.95018 0.91311 0.91558 1.19726 0.80076 1.05558 1.01797 1.21184 0.78747 1.01564 0.96980 1.46443 1.04951 1.17798 1.58898 1.19170 0.91534 0.82123 0.92907 1.21650 1.36985 1.03105 0.96792 0.93035 1.25537 0.95015 0.99856 0.97022 1.69974 1.38529 1.28155 1.18967 0.85737 0.78423 0.78808 0.79520 1.19958 1.20743 1.19783 1.23817 0.93599 0.91769 0.95854 1.66530 1.38344 1.04331 1.22109 1.21744 0.88493 0.98616 0.98942 1.26733 1.02031 1.01876 1.15489 1.84546 1.04940 1.19746 1.58350 0.85630 0.86165 0.89783 0.90034 0.95707 0.93887 0.92301 0.78796 0.78966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.73 18.54 20.01 0.37 -15.36 15 2 C 0.25 6.67 15.43 89.44 1.38 8.05 15 3 C -0.03 -0.71 6.03 28.79 0.17 -0.54 15 4 C 0.14 4.32 5.48 86.38 0.47 4.79 15 5 N -0.57 -20.79 2.56 -715.16 -1.83 -22.62 15 6 C 0.26 11.50 5.13 85.63 0.44 11.94 15 7 C -0.55 -27.07 9.39 25.60 0.24 -26.83 15 8 H 0.05 2.63 7.81 -2.91 -0.02 2.60 15 9 C 0.03 1.35 5.46 84.65 0.46 1.81 15 10 N -0.92 -48.71 13.29 21.45 0.28 -48.43 15 11 Si 0.95 40.93 29.54 68.60 2.03 42.96 15 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 15 C 0.32 11.60 7.74 179.32 1.39 12.99 15 16 N -0.59 -19.65 9.81 -202.03 -1.98 -21.63 15 17 C 0.07 2.00 11.34 83.54 0.95 2.95 15 18 C -0.32 -8.71 11.34 66.71 0.76 -7.95 15 19 S 0.08 2.62 21.69 -56.49 -1.23 1.40 15 20 H 0.13 2.71 8.14 -2.39 -0.02 2.69 15 21 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.08 2.62 8.07 -2.39 -0.02 2.60 15 23 H 0.08 2.51 7.61 -2.39 -0.02 2.49 15 24 H 0.03 1.17 7.04 -2.39 -0.02 1.15 15 25 H 0.04 1.91 8.07 -2.39 -0.02 1.89 15 26 H 0.27 13.62 8.31 -92.71 -0.77 12.85 15 27 H 0.20 3.95 8.06 -2.91 -0.02 3.93 15 28 H 0.19 3.92 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -57.90 273.40 5.07 -52.83 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.17 Total: 3.65 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.26 Total: 7.20 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -3.16 Total: -108.05 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.23 Total: 1.40 kcal Total: -57.90 5.07 -52.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003163622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.645 kcal (2) G-P(sol) polarization free energy of solvation -57.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds