Wall clock time and date at job start Sun Mar 29 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29385 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47326 * 270.00434 * 3 2 1 5 5 H 1.48508 * 109.47264 * 30.00379 * 3 2 1 6 6 H 1.48501 * 109.47113 * 149.99902 * 3 2 1 7 7 C 1.46573 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99595 * 179.97438 * 7 2 1 9 9 O 1.22525 * 120.00547 * 0.02562 * 7 2 1 10 10 C 1.35048 * 117.00521 * 179.97438 * 9 7 2 11 11 O 1.21435 * 119.99811 * 0.02562 * 10 9 7 12 12 C 1.47635 * 120.00070 * 180.02562 * 10 9 7 13 13 C 1.39701 * 120.15378 * 6.35702 * 12 10 9 14 14 C 1.37915 * 119.84093 * 180.02562 * 13 12 10 15 15 C 1.38408 * 120.15451 * 359.72401 * 14 13 12 16 16 C 1.38356 * 120.30928 * 0.55697 * 15 14 13 17 17 C 1.37952 * 120.15984 * 359.43935 * 16 15 14 18 18 N 1.48016 * 120.07976 * 180.29968 * 17 16 15 19 19 O 1.31700 * 119.99878 * 51.19406 * 18 17 16 20 20 O 1.31700 * 120.00065 * 231.19377 * 18 17 16 21 21 H 0.97005 * 119.99689 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.08010 * 359.97438 * 13 12 10 23 23 H 1.07993 * 119.91858 * 179.97438 * 14 13 12 24 24 H 1.08000 * 119.84394 * 180.27252 * 15 14 13 25 25 H 1.08008 * 119.91820 * 179.72711 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2939 0.0000 0.0000 3 14 2.2279 1.6177 0.0000 4 1 2.4753 2.0465 -1.4001 5 1 1.4253 2.6527 0.7001 6 1 3.5254 1.4401 0.7001 7 6 2.0267 -1.2694 0.0006 8 1 3.1067 -1.2694 0.0001 9 8 1.4141 -2.3305 0.0006 10 6 2.1496 -3.4631 0.0006 11 8 3.3623 -3.3996 0.0010 12 6 1.4793 -4.7786 0.0000 13 6 0.0911 -4.8587 -0.1343 14 6 -0.5284 -6.0909 -0.1335 15 6 0.2225 -7.2466 -0.0057 16 6 1.5971 -7.1743 0.1335 17 6 2.2301 -5.9486 0.1342 18 7 3.7015 -5.8736 0.2766 19 8 4.4764 -6.5980 -0.5041 20 8 4.2359 -5.0826 1.1839 21 1 -0.4850 0.8401 0.0004 22 1 -0.4956 -3.9580 -0.2377 23 1 -1.6015 -6.1543 -0.2368 24 1 -0.2675 -8.2090 -0.0101 25 1 2.1764 -8.0799 0.2371 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003502507.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:54 Heat of formation + Delta-G solvation = -12.016355 kcal Electronic energy + Delta-G solvation = -16268.151756 eV Core-core repulsion = 13217.647535 eV Total energy + Delta-G solvation = -3050.504221 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.052 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.41061 -40.93951 -39.14643 -37.70824 -35.36691 -34.89874 -32.82964 -32.77325 -28.36033 -27.41299 -25.02454 -23.57692 -22.31303 -20.50912 -19.85997 -19.15473 -18.94123 -17.29131 -17.16670 -17.13409 -16.44814 -16.14091 -15.63918 -15.54307 -14.66389 -14.29775 -14.03501 -13.35831 -13.33395 -12.72322 -12.66888 -12.48946 -12.22891 -12.19261 -11.98336 -11.76524 -11.02733 -10.95572 -10.56818 -10.37567 -9.02776 -6.09678 -1.65088 -0.49976 -0.10061 0.19079 1.18725 1.27709 1.41887 1.65324 1.99200 2.34611 2.39362 2.79645 3.34409 3.68742 3.83096 3.93406 3.99002 4.28061 4.61643 4.75458 4.81588 4.91184 5.04533 5.13088 5.53081 5.54557 5.61308 6.33700 6.72894 7.79300 8.17281 Molecular weight = 237.05amu Principal moments of inertia in cm(-1) A = 0.031269 B = 0.007898 C = 0.006439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.250087 B = 3544.307351 C = 4347.614899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.016 3.984 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.240 1.240 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.071 0.929 9 O -0.141 6.141 10 C 0.303 3.697 11 O -0.591 6.591 12 C -0.050 4.050 13 C -0.090 4.090 14 C -0.053 4.053 15 C -0.082 4.082 16 C -0.063 4.063 17 C -0.006 4.006 18 N -0.015 5.015 19 O -0.195 6.195 20 O -0.169 6.169 21 H 0.308 0.692 22 H 0.148 0.852 23 H 0.198 0.802 24 H 0.208 0.792 25 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.905 -9.489 -0.394 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.199 4.199 3 Si 0.836 3.164 4 H -0.176 1.176 5 H -0.163 1.163 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.088 0.912 9 O -0.042 6.042 10 C 0.161 3.839 11 O -0.497 6.497 12 C -0.052 4.052 13 C -0.109 4.109 14 C -0.071 4.071 15 C -0.100 4.100 16 C -0.082 4.082 17 C -0.090 4.090 18 N 0.467 4.533 19 O -0.388 6.388 20 O -0.369 6.369 21 H 0.120 0.880 22 H 0.166 0.834 23 H 0.215 0.785 24 H 0.225 0.775 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.551 -9.385 -0.481 13.399 hybrid contribution 1.540 1.080 0.076 1.883 sum -8.011 -8.305 -0.405 11.546 Atomic orbital electron populations 1.68882 1.09128 1.32762 1.33792 1.28210 0.96359 1.01532 0.93768 0.84623 0.78194 0.73188 0.80407 1.17645 1.16288 1.19265 1.21114 0.93662 0.83400 1.50771 0.91173 1.80489 1.41810 1.14000 1.67871 1.21243 0.86340 0.85728 0.90629 1.90701 1.15426 1.86600 1.56975 1.19027 0.95478 0.87925 1.02807 1.21730 0.89780 1.01908 0.97505 1.22092 1.03532 0.89612 0.91834 1.21925 0.89975 1.01919 0.96168 1.21339 0.97404 0.93292 0.96154 1.20626 0.75336 0.97195 1.15829 1.50525 1.05567 0.97956 0.99270 1.96122 1.61266 1.41541 1.39873 1.96281 1.80074 1.33380 1.27175 0.87950 0.83381 0.78542 0.77516 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.32 13.66 23.21 0.32 -41.00 15 2 C 0.02 0.83 5.69 87.23 0.50 1.32 15 3 Si 1.02 39.25 29.64 68.60 2.03 41.28 15 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 15 5 H -0.24 -8.00 7.11 99.48 0.71 -7.30 15 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 7 C -0.41 -24.64 9.62 70.00 0.67 -23.97 15 8 H 0.07 4.53 6.70 -2.91 -0.02 4.51 15 9 O -0.14 -8.29 8.56 82.25 0.70 -7.59 15 10 C 0.30 17.34 7.64 70.30 0.54 17.88 15 11 O -0.59 -38.18 12.00 27.84 0.33 -37.84 15 12 C -0.05 -2.18 5.87 -20.10 -0.12 -2.29 15 13 C -0.09 -2.87 9.62 22.55 0.22 -2.65 15 14 C -0.05 -0.97 10.03 22.23 0.22 -0.75 15 15 C -0.08 -1.27 10.04 22.34 0.22 -1.05 15 16 C -0.06 -1.60 9.86 22.23 0.22 -1.38 15 17 C -0.01 -0.22 6.39 36.65 0.23 0.01 15 18 N -0.01 -0.72 4.04 -45.80 -0.19 -0.90 15 19 O -0.19 -9.16 19.89 3.51 0.07 -9.09 15 20 O -0.17 -9.49 16.84 11.58 0.20 -9.30 15 21 H 0.31 13.42 8.26 -92.70 -0.77 12.66 15 22 H 0.15 4.94 7.63 -2.91 -0.02 4.92 15 23 H 0.20 1.58 8.06 -2.91 -0.02 1.56 15 24 H 0.21 0.84 8.06 -2.91 -0.02 0.82 15 25 H 0.17 3.41 8.06 -2.91 -0.02 3.38 15 Total: -1.00 -82.76 247.47 7.42 -75.34 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.24 Total: 1.97 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 2.71 Total: -12.87 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.13 Total: -41.90 kcal Atomic # 8 Polarization: -65.12 SS G_CDS: 1.30 Total: -63.82 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -82.76 7.42 -75.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003502507.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.324 kcal (2) G-P(sol) polarization free energy of solvation -82.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds