Wall clock time and date at job start Sun Mar 29 2020 22:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27630 * 3 2 1 5 5 H 1.48497 * 109.46924 * 30.27724 * 3 2 1 6 6 H 1.48503 * 109.47080 * 150.28146 * 3 2 1 7 7 C 1.38805 * 119.99813 * 180.28070 * 2 1 3 8 8 H 1.08000 * 119.99635 * 359.71919 * 7 2 1 9 9 S 1.76192 * 119.99929 * 179.72287 * 7 2 1 10 10 C 1.76203 * 100.00070 * 179.97438 * 9 7 2 11 11 N 1.33152 * 120.69345 * 359.71648 * 10 9 7 12 12 C 1.32602 * 121.02723 * 179.80015 * 11 10 9 13 13 N 1.38595 * 118.82155 * 180.25354 * 12 11 10 14 14 N 1.32201 * 122.35838 * 0.47215 * 12 11 10 15 15 C 1.33678 * 120.52611 * 359.78227 * 14 12 11 16 16 N 1.34629 * 134.42517 * 179.97438 * 15 14 12 17 17 C 1.30421 * 109.79527 * 180.02562 * 16 15 14 18 18 N 1.35222 * 110.12012 * 359.97438 * 17 16 15 19 19 H 0.96998 * 126.42345 * 180.02562 * 18 17 16 20 20 C 1.37961 * 107.16106 * 0.02562 * 18 17 16 21 21 H 0.97000 * 120.00178 * 359.72484 * 1 2 3 22 22 H 0.97006 * 120.00426 * 180.21270 * 13 12 11 23 23 H 0.97004 * 119.99927 * 0.21199 * 13 12 11 24 24 H 1.08002 * 124.94652 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4912 2.0497 -1.4001 5 1 1.4499 2.6509 0.7059 6 1 3.5501 1.4384 0.6941 7 6 2.0095 -1.2021 -0.0059 8 1 1.4694 -2.1374 -0.0059 9 16 3.7714 -1.2021 -0.0133 10 6 4.0774 -2.9374 -0.0181 11 7 3.0679 -3.8055 -0.0100 12 6 3.2905 -5.1127 -0.0175 13 7 2.2056 -5.9753 -0.0138 14 7 4.5101 -5.6227 -0.0240 15 6 5.5808 -4.8223 -0.0277 16 7 6.9112 -5.0281 -0.0338 17 6 7.5353 -3.8830 -0.0345 18 7 6.6430 -2.8669 -0.0294 19 1 6.8494 -1.9192 -0.0291 20 6 5.3840 -3.4309 -0.0247 21 1 -0.4850 0.8400 0.0040 22 1 2.3487 -6.9347 -0.0161 23 1 1.3032 -5.6195 -0.0090 24 1 8.6087 -3.7634 -0.0394 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004430638.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:41 Heat of formation + Delta-G solvation = 102.435804 kcal Electronic energy + Delta-G solvation = -13900.189735 eV Core-core repulsion = 11361.986906 eV Total energy + Delta-G solvation = -2538.202829 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.96287 -38.69288 -33.80386 -33.24505 -32.77664 -31.31766 -28.58746 -25.97611 -24.27815 -22.60436 -21.40895 -18.98555 -18.16121 -17.55239 -16.64557 -15.44396 -15.41668 -15.28508 -14.88602 -14.21406 -13.94240 -13.39133 -13.09704 -11.88237 -11.54260 -11.32529 -11.16004 -10.98666 -10.28749 -10.11613 -9.97730 -9.34839 -9.24828 -8.89529 -8.21124 -7.84855 -7.15470 -6.55550 -4.33621 1.20692 1.95086 2.39979 3.03084 3.08884 3.10800 3.11311 3.19083 3.62850 3.96526 4.16828 4.53174 4.57276 4.85740 5.01842 5.19562 5.39565 5.95728 6.16302 6.54879 7.46510 7.48642 7.70150 7.77163 7.99438 8.07545 8.57382 8.83301 9.10744 10.52480 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.030421 B = 0.009042 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.207029 B = 3095.952408 C = 4006.315529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.098 3.902 3 Si 0.845 3.155 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.240 1.240 7 C -0.520 4.520 8 H 0.128 0.872 9 S 0.034 5.966 10 C 0.238 3.762 11 N -0.545 5.545 12 C 0.585 3.415 13 N -0.826 5.826 14 N -0.582 5.582 15 C 0.336 3.664 16 N -0.505 5.505 17 C 0.278 3.722 18 N -0.567 5.567 19 H 0.425 0.575 20 C -0.117 4.117 21 H 0.276 0.724 22 H 0.408 0.592 23 H 0.414 0.586 24 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.493 -2.400 0.019 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.113 4.113 3 Si 0.669 3.331 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.165 1.165 7 C -0.668 4.668 8 H 0.146 0.854 9 S 0.278 5.722 10 C -0.028 4.028 11 N -0.275 5.275 12 C 0.219 3.781 13 N -0.377 5.377 14 N -0.315 5.315 15 C 0.085 3.915 16 N -0.231 5.231 17 C -0.013 4.013 18 N -0.179 5.179 19 H 0.264 0.736 20 C -0.239 4.239 21 H 0.086 0.914 22 H 0.238 0.762 23 H 0.245 0.755 24 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 10.582 -2.675 0.022 10.915 hybrid contribution -0.540 1.355 -0.008 1.459 sum 10.041 -1.320 0.014 10.128 Atomic orbital electron populations 1.69863 1.05820 1.28141 1.45098 1.24838 0.94688 0.98592 0.93191 0.86979 0.81713 0.84202 0.80167 1.18713 1.18950 1.16480 1.22729 0.86464 0.99544 1.58028 0.85393 1.82863 1.13462 0.93880 1.81979 1.22577 0.86239 1.01051 0.92888 1.68493 1.31687 1.01059 1.26288 1.19033 0.85503 0.85412 0.88116 1.41553 1.05250 1.07354 1.83536 1.66902 0.95849 1.38281 1.30499 1.18829 0.90770 0.85375 0.96538 1.69938 1.02644 1.25329 1.25154 1.25301 0.97271 0.81370 0.97344 1.42606 1.04692 1.10196 1.60388 0.73603 1.19791 0.87256 0.97076 1.19789 0.91355 0.76203 0.75523 0.76316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.02 13.96 55.49 0.77 -23.25 14 2 C 0.10 2.63 5.50 -17.46 -0.10 2.53 14 3 Si 0.85 18.78 27.74 -169.99 -4.71 14.07 14 4 H -0.26 -5.75 7.11 56.52 0.40 -5.34 14 5 H -0.26 -5.75 7.11 56.52 0.40 -5.35 14 6 H -0.24 -5.03 6.74 56.52 0.38 -4.65 14 7 C -0.52 -14.06 9.82 30.94 0.30 -13.75 14 8 H 0.13 3.81 6.81 -52.49 -0.36 3.45 14 9 S 0.03 0.76 19.66 -107.50 -2.11 -1.35 14 10 C 0.24 5.31 7.01 -16.44 -0.12 5.19 14 11 N -0.55 -12.65 8.64 -12.67 -0.11 -12.76 14 12 C 0.58 12.29 8.65 -322.77 -2.79 9.50 14 13 N -0.83 -13.42 9.08 29.77 0.27 -13.15 14 14 N -0.58 -12.51 10.51 -13.69 -0.14 -12.65 14 15 C 0.34 6.97 8.42 -157.48 -1.33 5.65 14 16 N -0.51 -9.00 11.23 -13.87 -0.16 -9.15 14 17 C 0.28 3.48 12.95 -90.28 -1.17 2.31 14 18 N -0.57 -7.96 6.20 -11.70 -0.07 -8.04 14 19 H 0.42 4.56 8.96 -40.82 -0.37 4.19 14 20 C -0.12 -2.29 7.15 -83.71 -0.60 -2.89 14 21 H 0.28 7.13 8.31 -40.82 -0.34 6.79 14 22 H 0.41 5.47 8.94 -40.82 -0.36 5.11 14 23 H 0.41 6.23 8.94 -40.82 -0.36 5.86 14 24 H 0.22 1.35 8.06 -52.49 -0.42 0.92 14 LS Contribution 237.48 15.07 3.58 3.58 Total: -1.00 -33.70 237.48 -9.51 -43.20 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -1.03 Total: 10.97 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -5.79 Total: 8.54 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: 0.56 Total: -79.01 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.07 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.11 Total: -1.35 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -33.70 -9.51 -43.20 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004430638.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.639 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds