Wall clock time and date at job start Sun Mar 29 2020 22:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27630 * 3 2 1 5 5 H 1.48497 * 109.46924 * 30.27724 * 3 2 1 6 6 H 1.48503 * 109.47080 * 150.28146 * 3 2 1 7 7 C 1.38805 * 119.99813 * 180.28070 * 2 1 3 8 8 H 1.08000 * 119.99635 * 359.71919 * 7 2 1 9 9 S 1.76192 * 119.99929 * 179.72287 * 7 2 1 10 10 C 1.76203 * 100.00070 * 179.97438 * 9 7 2 11 11 N 1.33152 * 120.69345 * 359.71648 * 10 9 7 12 12 C 1.32602 * 121.02723 * 179.80015 * 11 10 9 13 13 N 1.38595 * 118.82155 * 180.25354 * 12 11 10 14 14 N 1.32201 * 122.35838 * 0.47215 * 12 11 10 15 15 C 1.33678 * 120.52611 * 359.78227 * 14 12 11 16 16 N 1.34629 * 134.42517 * 179.97438 * 15 14 12 17 17 C 1.30421 * 109.79527 * 180.02562 * 16 15 14 18 18 N 1.35222 * 110.12012 * 359.97438 * 17 16 15 19 19 H 0.96998 * 126.42345 * 180.02562 * 18 17 16 20 20 C 1.37961 * 107.16106 * 0.02562 * 18 17 16 21 21 H 0.97000 * 120.00178 * 359.72484 * 1 2 3 22 22 H 0.97006 * 120.00426 * 180.21270 * 13 12 11 23 23 H 0.97004 * 119.99927 * 0.21199 * 13 12 11 24 24 H 1.08002 * 124.94652 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4912 2.0497 -1.4001 5 1 1.4499 2.6509 0.7059 6 1 3.5501 1.4384 0.6941 7 6 2.0095 -1.2021 -0.0059 8 1 1.4694 -2.1374 -0.0059 9 16 3.7714 -1.2021 -0.0133 10 6 4.0774 -2.9374 -0.0181 11 7 3.0679 -3.8055 -0.0100 12 6 3.2905 -5.1127 -0.0175 13 7 2.2056 -5.9753 -0.0138 14 7 4.5101 -5.6227 -0.0240 15 6 5.5808 -4.8223 -0.0277 16 7 6.9112 -5.0281 -0.0338 17 6 7.5353 -3.8830 -0.0345 18 7 6.6430 -2.8669 -0.0294 19 1 6.8494 -1.9192 -0.0291 20 6 5.3840 -3.4309 -0.0247 21 1 -0.4850 0.8400 0.0040 22 1 2.3487 -6.9347 -0.0161 23 1 1.3032 -5.6195 -0.0090 24 1 8.6087 -3.7634 -0.0394 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004430638.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:40 Heat of formation + Delta-G solvation = 78.133903 kcal Electronic energy + Delta-G solvation = -13901.243544 eV Core-core repulsion = 11361.986906 eV Total energy + Delta-G solvation = -2539.256639 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.34124 -40.20491 -35.30543 -34.77924 -34.66071 -32.76292 -30.04655 -28.00290 -25.76842 -24.11855 -22.70218 -20.52645 -19.76678 -19.06315 -18.22249 -17.18303 -16.89722 -16.77702 -16.37664 -15.82520 -15.10214 -14.92600 -14.84343 -13.69309 -13.24687 -13.12529 -12.78215 -12.60497 -11.99177 -11.51918 -11.42024 -11.22319 -11.15506 -10.36002 -9.82787 -9.49221 -8.75248 -8.54882 -6.35921 -0.27509 0.41003 0.70499 1.30250 1.35718 1.47154 1.80917 1.85841 2.13593 2.23438 2.37529 2.82201 3.01418 3.13517 3.62729 3.89065 4.11973 4.65337 4.76294 5.17155 5.71869 5.95864 6.36283 6.40444 6.43160 6.53451 6.80472 6.82179 7.58428 8.57496 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.030421 B = 0.009042 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.207029 B = 3095.952408 C = 4006.315529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.045 3.955 3 Si 0.909 3.091 4 H -0.254 1.254 5 H -0.257 1.257 6 H -0.217 1.217 7 C -0.548 4.548 8 H 0.085 0.915 9 S 0.062 5.938 10 C 0.221 3.779 11 N -0.580 5.580 12 C 0.569 3.431 13 N -0.809 5.809 14 N -0.593 5.593 15 C 0.317 3.683 16 N -0.543 5.543 17 C 0.326 3.674 18 N -0.557 5.557 19 H 0.443 0.557 20 C -0.126 4.126 21 H 0.280 0.720 22 H 0.421 0.579 23 H 0.418 0.582 24 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.020 -1.621 0.055 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.162 4.162 3 Si 0.729 3.271 4 H -0.178 1.178 5 H -0.181 1.181 6 H -0.140 1.140 7 C -0.696 4.696 8 H 0.103 0.897 9 S 0.305 5.695 10 C -0.045 4.045 11 N -0.310 5.310 12 C 0.203 3.797 13 N -0.361 5.361 14 N -0.327 5.327 15 C 0.065 3.935 16 N -0.269 5.269 17 C 0.037 3.963 18 N -0.169 5.169 19 H 0.286 0.714 20 C -0.249 4.249 21 H 0.090 0.910 22 H 0.254 0.746 23 H 0.250 0.750 24 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 14.106 -1.913 0.059 14.235 hybrid contribution -1.453 0.848 -0.026 1.682 sum 12.653 -1.065 0.033 12.698 Atomic orbital electron populations 1.69986 1.07831 1.29441 1.46867 1.25808 0.95544 1.02474 0.92343 0.86011 0.81250 0.78997 0.80858 1.17823 1.18126 1.14035 1.22769 0.89752 0.98356 1.58758 0.89735 1.82178 1.08921 0.94464 1.83915 1.22752 0.87524 1.00909 0.93274 1.68449 1.33038 1.02262 1.27266 1.19334 0.86431 0.85350 0.88592 1.41512 1.04545 1.07679 1.82391 1.66949 0.96325 1.38889 1.30512 1.19341 0.91879 0.85939 0.96303 1.70016 1.01087 1.28000 1.27795 1.26744 0.99305 0.79212 0.91026 1.42652 1.02700 1.11657 1.59929 0.71383 1.19639 0.88144 0.97104 1.20060 0.90997 0.74589 0.74987 0.69287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.84 13.96 21.65 0.30 -52.53 14 2 C 0.05 2.47 5.50 84.87 0.47 2.94 14 3 Si 0.91 38.38 27.74 68.60 1.90 40.28 14 4 H -0.25 -10.33 7.11 99.48 0.71 -9.62 14 5 H -0.26 -10.43 7.11 99.48 0.71 -9.73 14 6 H -0.22 -8.26 6.74 99.48 0.67 -7.59 14 7 C -0.55 -30.72 9.82 67.96 0.67 -30.05 14 8 H 0.08 5.36 6.81 -2.91 -0.02 5.34 14 9 S 0.06 2.74 19.66 -56.49 -1.11 1.63 14 10 C 0.22 9.86 7.01 84.84 0.59 10.45 14 11 N -0.58 -27.74 8.64 -194.00 -1.68 -29.42 14 12 C 0.57 24.32 8.65 261.47 2.26 26.58 14 13 N -0.81 -26.82 9.08 -59.73 -0.54 -27.36 14 14 N -0.59 -25.40 10.51 -197.21 -2.07 -27.47 14 15 C 0.32 12.73 8.42 134.45 1.13 13.86 14 16 N -0.54 -17.55 11.23 -197.78 -2.22 -19.77 14 17 C 0.33 6.44 12.95 180.23 2.33 8.77 14 18 N -0.56 -13.38 6.20 -190.94 -1.18 -14.57 14 19 H 0.44 7.48 8.96 -92.71 -0.83 6.64 14 20 C -0.13 -4.74 7.15 39.08 0.28 -4.46 14 21 H 0.28 14.96 8.31 -92.71 -0.77 14.19 14 22 H 0.42 11.32 8.94 -92.70 -0.83 10.50 14 23 H 0.42 13.09 8.94 -92.71 -0.83 12.26 14 24 H 0.29 1.18 8.06 -2.91 -0.02 1.15 14 Total: -1.00 -77.90 237.48 -0.09 -77.99 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -1.22 Total: 23.14 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 7.73 Total: 28.09 kcal Atomic # 7 Polarization: -163.73 SS G_CDS: -7.39 Total: -171.12 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.11 Total: 1.63 kcal Total: -77.90 -0.09 -77.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004430638.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.123 kcal (2) G-P(sol) polarization free energy of solvation -77.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds