Wall clock time and date at job start Sun Mar 29 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86790 * 119.99988 * 2 1 4 4 H 1.48499 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47056 * 299.99936 * 3 2 1 6 6 H 1.48493 * 109.47588 * 59.99913 * 3 2 1 7 7 C 1.38733 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99852 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.76193 * 99.99968 * 179.97438 * 9 7 2 11 11 N 1.31584 * 119.46952 * 0.02562 * 10 9 7 12 12 C 1.33686 * 121.67628 * 179.72199 * 11 10 9 13 13 N 1.38783 * 119.89742 * 179.97438 * 12 11 10 14 14 C 1.38356 * 120.20328 * 359.97438 * 12 11 10 15 15 C 1.40406 * 118.47550 * 0.02562 * 14 12 11 16 16 N 1.32584 * 133.92245 * 179.97438 * 15 14 12 17 17 C 1.32810 * 109.60133 * 180.02562 * 16 15 14 18 18 N 1.31122 * 109.70803 * 359.97438 * 17 16 15 19 19 N 1.36287 * 119.46602 * 179.72553 * 10 9 7 20 20 H 0.96994 * 119.99990 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99742 * 359.97438 * 13 12 11 22 22 H 0.96997 * 119.99921 * 179.97438 * 13 12 11 23 23 H 1.08005 * 120.76086 * 179.97438 * 14 12 11 24 24 H 1.07994 * 125.14105 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3463 -0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8911 2.3964 1.2124 7 6 2.0094 -1.2015 0.0005 8 1 3.0894 -1.2015 0.0001 9 16 1.1285 -2.7274 0.0005 10 6 2.4782 -3.8599 0.0005 11 7 3.7105 -3.3984 0.0010 12 6 4.7669 -4.2176 0.0066 13 7 6.0508 -3.6908 0.0064 14 6 4.5842 -5.5891 0.0125 15 6 3.2724 -6.0896 0.0120 16 7 2.7536 -7.3098 0.0161 17 6 1.4279 -7.2302 0.0125 18 7 1.0604 -5.9715 0.0067 19 7 2.2291 -5.1998 0.0062 20 1 -0.4850 0.8400 -0.0004 21 1 6.1806 -2.7295 0.0019 22 1 6.8184 -4.2838 0.0108 23 1 5.4312 -6.2592 0.0166 24 1 0.7545 -8.0745 0.0142 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004475765.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:33 Heat of formation + Delta-G solvation = 122.762393 kcal Electronic energy + Delta-G solvation = -13910.203047 eV Core-core repulsion = 11372.881644 eV Total energy + Delta-G solvation = -2537.321402 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.92179 -38.31697 -34.54656 -33.00953 -31.82531 -31.19293 -28.40725 -26.01975 -24.36165 -22.78065 -21.45528 -18.64772 -18.14960 -17.35955 -16.15121 -15.71195 -15.30916 -15.14166 -15.03459 -13.72752 -13.42399 -13.28583 -13.13115 -11.64609 -11.53880 -11.53523 -11.27803 -11.09682 -10.37675 -9.77580 -9.75865 -9.61364 -9.24108 -9.12668 -9.07398 -7.78788 -6.94608 -6.76540 -4.51048 1.16330 1.77753 2.17722 2.90441 3.01082 3.06114 3.14309 3.35687 3.58050 3.83335 4.09761 4.55749 4.71249 4.85104 5.15522 5.39833 5.63491 5.92268 6.42669 6.74809 6.92049 7.08338 7.29320 7.51325 7.60011 8.13295 8.45102 8.59320 8.75064 10.29872 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.031635 B = 0.008620 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.890490 B = 3247.429501 C = 4122.472608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.118 0.882 9 S 0.242 5.758 10 C 0.347 3.653 11 N -0.550 5.550 12 C 0.455 3.545 13 N -0.840 5.840 14 C -0.326 4.326 15 C 0.352 3.648 16 N -0.582 5.582 17 C 0.230 3.770 18 N -0.341 5.341 19 N -0.344 5.344 20 H 0.280 0.720 21 H 0.406 0.594 22 H 0.408 0.592 23 H 0.141 0.859 24 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.952 -4.435 0.008 8.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.134 4.134 3 Si 0.763 3.237 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.701 4.701 8 H 0.135 0.865 9 S 0.488 5.512 10 C -0.016 4.016 11 N -0.283 5.283 12 C 0.216 3.784 13 N -0.382 5.382 14 C -0.366 4.366 15 C 0.097 3.903 16 N -0.315 5.315 17 C -0.073 4.073 18 N -0.171 5.171 19 N -0.130 5.130 20 H 0.090 0.910 21 H 0.236 0.764 22 H 0.238 0.762 23 H 0.159 0.841 24 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.915 -3.689 0.005 6.145 hybrid contribution 2.235 0.453 0.001 2.280 sum 7.150 -3.237 0.006 7.848 Atomic orbital electron populations 1.69935 1.06359 1.29259 1.43934 1.25252 0.95215 1.00227 0.92669 0.85784 0.79976 0.79723 0.78232 1.18729 1.20088 1.20084 1.23754 0.98395 0.89707 1.58200 0.86462 1.84216 0.97628 0.94747 1.74639 1.25886 0.98587 0.83474 0.93610 1.68450 0.95305 1.33332 1.31242 1.18053 0.86063 0.88276 0.86028 1.41978 1.02961 1.10720 1.82537 1.19559 0.93206 0.93149 1.30692 1.21301 0.90380 0.85514 0.93104 1.70835 1.07910 1.19613 1.33190 1.26065 0.91689 0.94632 0.94872 1.78275 1.03074 1.03111 1.32680 1.48614 1.06664 1.06323 1.51416 0.90977 0.76446 0.76205 0.84129 0.76660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.57 13.22 55.49 0.73 -21.83 14 2 C 0.08 1.96 5.49 -17.48 -0.10 1.86 14 3 Si 0.94 19.29 29.55 -169.99 -5.02 14.27 14 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 7 C -0.55 -14.11 9.25 30.92 0.29 -13.82 14 8 H 0.12 2.96 6.53 -52.49 -0.34 2.62 14 9 S 0.24 5.93 21.75 -107.50 -2.34 3.59 14 10 C 0.35 8.01 7.96 -88.32 -0.70 7.31 14 11 N -0.55 -11.87 8.45 -12.11 -0.10 -11.97 14 12 C 0.45 8.20 7.77 -154.41 -1.20 7.00 14 13 N -0.84 -10.74 9.06 31.16 0.28 -10.46 14 14 C -0.33 -5.93 10.03 -38.72 -0.39 -6.32 14 15 C 0.35 7.38 7.93 -156.18 -1.24 6.14 14 16 N -0.58 -11.64 11.26 -13.96 -0.16 -11.79 14 17 C 0.23 4.17 12.98 -91.85 -1.19 2.98 14 18 N -0.34 -7.23 12.66 29.28 0.37 -6.86 14 19 N -0.34 -7.70 3.95 -12.27 -0.05 -7.75 14 20 H 0.28 6.76 8.31 -40.82 -0.34 6.42 14 21 H 0.41 4.88 8.95 -40.82 -0.37 4.52 14 22 H 0.41 3.76 8.82 -40.82 -0.36 3.40 14 23 H 0.14 2.14 8.06 -52.48 -0.42 1.72 14 24 H 0.22 2.73 8.06 -52.49 -0.42 2.31 14 LS Contribution 241.36 15.07 3.64 3.64 Total: -1.00 -30.05 241.36 -8.23 -38.27 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -1.05 Total: 5.75 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -4.53 Total: 5.15 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: 1.08 Total: -70.67 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -2.34 Total: 3.59 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.05 -8.23 -38.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004475765.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.036 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds