Wall clock time and date at job start Sun Mar 29 2020 22:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31590 * 1 3 3 Si 1.86804 * 120.00454 * 2 1 4 4 H 1.48496 * 109.47054 * 240.00343 * 3 2 1 5 5 H 1.48498 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47065 * 120.00004 * 3 2 1 7 7 C 1.38795 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00365 * 163.57980 * 7 2 1 9 9 N 1.36853 * 119.99608 * 343.56577 * 7 2 1 10 10 C 1.39539 * 120.52152 * 154.96061 * 9 7 2 11 11 C 1.39237 * 119.14669 * 346.39729 * 10 9 7 12 12 C 1.37970 * 120.01535 * 179.74974 * 11 10 9 13 13 C 1.38357 * 119.92741 * 0.02562 * 12 11 10 14 14 C 1.38173 * 120.18865 * 0.08132 * 13 12 11 15 15 C 1.38447 * 120.31731 * 359.97438 * 14 13 12 16 16 C 1.50596 * 118.94900 * 179.62091 * 15 14 13 17 17 C 1.52856 * 110.46153 * 159.63635 * 16 15 14 18 18 C 1.46917 * 120.52853 * 334.94306 * 9 7 2 19 19 H 1.08996 * 109.78924 * 344.38599 * 18 9 7 20 20 Cl 1.80302 * 109.79278 * 105.23088 * 18 9 7 21 21 H 0.97011 * 119.99656 * 5.03957 * 1 2 3 22 22 H 1.08001 * 119.99226 * 359.76407 * 11 10 9 23 23 H 1.08000 * 120.03981 * 180.28500 * 12 11 10 24 24 H 1.07995 * 119.90763 * 180.02562 * 13 12 11 25 25 H 1.08003 * 119.84315 * 180.02562 * 14 13 12 26 26 H 1.08996 * 109.30572 * 279.94161 * 16 15 14 27 27 H 1.08995 * 109.30466 * 39.33477 * 16 15 14 28 28 H 1.09008 * 109.57066 * 291.41292 * 17 16 15 29 29 H 1.08997 * 109.57817 * 171.03209 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1037 1.6963 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1038 1.6963 1.2124 7 6 2.0098 -1.2020 -0.0005 8 1 3.0567 -1.2211 -0.2649 9 7 1.3674 -2.3631 0.3343 10 6 1.8339 -3.5917 -0.1347 11 6 2.7716 -3.6131 -1.1638 12 6 3.2489 -4.8178 -1.6377 13 6 2.7944 -6.0041 -1.0895 14 6 1.8623 -5.9861 -0.0696 15 6 1.3765 -4.7824 0.4119 16 6 0.3549 -4.7990 1.5183 17 6 0.3237 -3.4503 2.2370 18 6 0.1759 -2.3357 1.1933 19 1 0.1030 -1.3695 1.6925 20 17 -1.3004 -2.6236 0.1991 21 1 -0.4850 0.8369 -0.0738 22 1 3.1255 -2.6865 -1.5911 23 1 3.9796 -4.8347 -2.4328 24 1 3.1685 -6.9468 -1.4604 25 1 1.5117 -6.9154 0.3545 26 1 -0.6290 -5.0058 1.0973 27 1 0.6098 -5.5820 2.2324 28 1 1.2517 -3.3104 2.7915 29 1 -0.5222 -3.4219 2.9239 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005593863.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:12 Heat of formation + Delta-G solvation = 6.241239 kcal Electronic energy + Delta-G solvation = -14968.052108 eV Core-core repulsion = 12494.881855 eV Total energy + Delta-G solvation = -2473.170253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77078 -37.61823 -35.91214 -35.07890 -33.45175 -30.88288 -30.14370 -27.48303 -25.01750 -23.78757 -22.76707 -20.25935 -19.08930 -17.93275 -16.75719 -16.51043 -16.20461 -15.25992 -14.98706 -14.85892 -14.51445 -14.13488 -13.78902 -13.44947 -13.03087 -12.85269 -12.58333 -12.34776 -12.20596 -12.10991 -11.63167 -11.44949 -11.23478 -10.99420 -10.73206 -10.26671 -9.35590 -8.39223 -8.20046 -5.71211 0.79424 0.89766 1.43032 1.45250 1.52301 2.00063 2.28296 2.94003 3.06760 3.33017 3.96528 4.09739 4.16975 4.36530 4.45657 4.62467 4.75177 4.84635 4.95620 5.02327 5.04145 5.22368 5.29603 5.44773 5.48620 5.75808 5.92409 5.98291 6.09069 6.47485 6.75526 7.40031 7.74519 8.77701 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.011674 C = 0.008982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.348764 B = 2398.001860 C = 3116.650561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C -0.013 4.013 3 Si 0.984 3.016 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.087 0.913 9 N -0.467 5.467 10 C 0.184 3.816 11 C -0.221 4.221 12 C -0.084 4.084 13 C -0.209 4.209 14 C -0.077 4.077 15 C -0.190 4.190 16 C -0.061 4.061 17 C -0.131 4.131 18 C 0.266 3.734 19 H 0.097 0.903 20 Cl -0.231 7.231 21 H 0.268 0.732 22 H 0.099 0.901 23 H 0.130 0.870 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -7.303 3.295 8.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.215 4.215 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.105 0.895 9 N -0.161 5.161 10 C 0.076 3.924 11 C -0.244 4.244 12 C -0.103 4.103 13 C -0.230 4.230 14 C -0.095 4.095 15 C -0.195 4.195 16 C -0.097 4.097 17 C -0.170 4.170 18 C 0.133 3.867 19 H 0.115 0.885 20 Cl -0.206 7.206 21 H 0.077 0.923 22 H 0.117 0.883 23 H 0.148 0.852 24 H 0.154 0.846 25 H 0.157 0.843 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.667 -6.920 3.366 7.874 hybrid contribution 0.177 1.346 -0.486 1.442 sum 1.844 -5.574 2.880 6.540 Atomic orbital electron populations 1.70261 1.06330 1.28092 1.47280 1.26055 0.96373 1.02123 0.96956 0.85112 0.77707 0.77451 0.78815 1.19972 1.20875 1.19470 1.19549 0.94473 0.84038 1.48153 0.89518 1.43017 1.24510 1.02823 1.45771 1.18264 0.95162 0.86370 0.92611 1.20786 1.04668 0.98429 1.00537 1.21013 0.98617 0.91859 0.98825 1.20926 1.02899 0.97848 1.01333 1.20996 0.95941 0.96411 0.96201 1.19473 1.05017 0.91903 1.03156 1.20231 0.97420 0.96840 0.95256 1.22230 1.03450 0.94557 0.96736 1.23756 0.77234 0.99748 0.85977 0.88467 1.98651 1.47350 1.96805 1.77772 0.92290 0.88301 0.85249 0.84592 0.84323 0.91399 0.88598 0.90461 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.18 10.05 21.65 0.22 -46.96 15 2 C -0.01 -0.65 4.94 84.86 0.42 -0.23 15 3 Si 0.98 41.27 29.59 68.60 2.03 43.30 15 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 7 C -0.33 -17.57 8.70 84.04 0.73 -16.84 15 8 H 0.09 4.53 6.81 -2.91 -0.02 4.51 15 9 N -0.47 -23.25 2.74 -485.52 -1.33 -24.58 15 10 C 0.18 8.52 6.22 38.28 0.24 8.75 15 11 C -0.22 -9.83 9.19 22.45 0.21 -9.62 15 12 C -0.08 -3.07 10.05 22.23 0.22 -2.85 15 13 C -0.21 -6.82 10.04 22.28 0.22 -6.59 15 14 C -0.08 -2.57 9.66 22.30 0.22 -2.35 15 15 C -0.19 -7.45 5.76 -19.72 -0.11 -7.57 15 16 C -0.06 -2.04 5.33 29.77 0.16 -1.88 15 17 C -0.13 -4.70 5.76 30.68 0.18 -4.53 15 18 C 0.27 12.16 2.64 86.44 0.23 12.39 15 19 H 0.10 4.87 6.36 -2.39 -0.02 4.85 15 20 Cl -0.23 -10.75 26.28 -2.72 -0.07 -10.82 15 21 H 0.27 13.83 8.32 -92.70 -0.77 13.06 15 22 H 0.10 4.66 6.56 -2.91 -0.02 4.64 15 23 H 0.13 3.92 8.06 -2.91 -0.02 3.90 15 24 H 0.14 3.47 8.06 -2.91 -0.02 3.45 15 25 H 0.14 3.63 8.06 -2.91 -0.02 3.60 15 26 H 0.07 2.33 7.29 -2.39 -0.02 2.31 15 27 H 0.10 2.57 8.12 -2.39 -0.02 2.55 15 28 H 0.08 2.73 8.14 -2.38 -0.02 2.71 15 29 H 0.10 2.98 8.14 -2.39 -0.02 2.96 15 Total: -1.00 -58.52 252.21 4.70 -53.82 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.15 Total: 16.55 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 2.71 Total: -31.31 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.11 Total: -71.54 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 17 Polarization: -10.75 SS G_CDS: -0.07 Total: -10.82 kcal Total: -58.52 4.70 -53.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005593863.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.062 kcal (2) G-P(sol) polarization free energy of solvation -58.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds