Wall clock time and date at job start Sun Mar 29 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.46740 * 119.99943 * 319.89087 * 3 2 1 5 5 N 1.34780 * 119.99914 * 359.97438 * 4 3 2 6 6 S 1.71194 * 120.00049 * 179.97438 * 4 3 2 7 7 C 1.37980 * 120.00091 * 139.88665 * 3 2 1 8 8 C 1.51278 * 125.16219 * 180.02562 * 7 3 2 9 9 C 1.54399 * 105.18762 * 182.05208 * 8 7 3 10 10 C 1.54522 * 102.49085 * 15.61218 * 9 8 7 11 11 N 1.35795 * 125.15980 * 359.69144 * 7 3 2 12 12 C 1.36573 * 125.29968 * 339.55936 * 11 7 3 13 13 H 1.08006 * 120.00096 * 338.81864 * 12 11 7 14 14 C 1.39079 * 120.00287 * 158.82062 * 12 11 7 15 15 N 1.31327 * 119.99994 * 351.58960 * 14 12 11 16 16 Si 1.86807 * 120.00291 * 171.58482 * 14 12 11 17 17 H 1.48500 * 109.46817 * 94.71350 * 16 14 12 18 18 H 1.48491 * 109.47388 * 214.71629 * 16 14 12 19 19 H 1.48499 * 109.46906 * 334.71731 * 16 14 12 20 20 H 0.97000 * 120.00209 * 0.02562 * 5 4 3 21 21 H 0.96997 * 119.99912 * 179.97438 * 5 4 3 22 22 H 1.08997 * 110.29953 * 300.98959 * 8 7 3 23 23 H 1.09008 * 110.30114 * 63.12556 * 8 7 3 24 24 H 1.09004 * 110.79864 * 133.86125 * 9 8 7 25 25 H 1.08996 * 110.80925 * 257.35740 * 9 8 7 26 26 H 1.09004 * 110.44593 * 91.74620 * 10 9 8 27 27 H 1.08997 * 110.44848 * 214.29095 * 10 9 8 28 28 H 0.97000 * 120.00249 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3022 -0.9710 0.8187 5 7 2.6286 -1.8636 1.5711 6 16 5.0141 -0.9707 0.8182 7 6 3.2575 0.9148 -0.7699 8 6 4.7641 1.0192 -0.8580 9 6 5.0325 2.2159 -1.7960 10 6 3.6611 2.9270 -1.8313 11 7 2.6867 1.8531 -1.5685 12 6 1.4092 1.8088 -2.0494 13 1 0.8843 0.8663 -2.1018 14 6 0.7841 2.9772 -2.4716 15 7 1.3535 4.1410 -2.2569 16 14 -0.8654 2.8914 -3.3442 17 1 -1.9583 3.0769 -2.3560 18 1 -0.9389 3.9620 -4.3704 19 1 -1.0103 1.5667 -3.9995 20 1 1.6586 -1.8641 1.5711 21 1 3.1139 -2.5061 2.1120 22 1 5.1884 1.2088 0.1280 23 1 5.1824 0.1058 -1.2811 24 1 5.7976 2.8707 -1.3788 25 1 5.3161 1.8722 -2.7907 26 1 3.6087 3.6917 -1.0563 27 1 3.4849 3.3659 -2.8133 28 1 0.9178 4.9560 -2.5517 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012341503.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:18 Heat of formation + Delta-G solvation = 51.325352 kcal Electronic energy + Delta-G solvation = -14608.547559 eV Core-core repulsion = 12171.668757 eV Total energy + Delta-G solvation = -2436.878801 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.34372 -36.46641 -34.86628 -33.88384 -31.31296 -30.64418 -26.15822 -25.73073 -22.98442 -21.15492 -19.84009 -18.56883 -17.36077 -16.67049 -15.61841 -15.24995 -14.69743 -14.46165 -13.37651 -12.99542 -12.77154 -12.55136 -12.38004 -12.06355 -11.89707 -11.64202 -11.52183 -11.11014 -10.91758 -10.74595 -10.60892 -10.58414 -10.12052 -9.71257 -9.14873 -7.69119 -7.29226 -6.91190 -6.31703 -4.57182 1.60735 2.67870 2.84796 2.89258 2.98182 3.09371 3.54210 3.80400 4.11735 4.29457 4.51062 4.61018 5.14826 5.43403 5.61600 5.68682 5.98883 6.17380 6.44863 6.51506 6.63545 6.65866 6.92988 6.97225 7.05668 7.32427 7.52735 7.71966 7.82678 8.35994 8.75317 8.82006 9.73829 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.028133 B = 0.009883 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.016283 B = 2832.566206 C = 3706.053516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.293 3.707 3 C -0.274 4.274 4 C 0.445 3.555 5 N -0.809 5.809 6 S -0.723 6.723 7 C 0.204 3.796 8 C -0.068 4.068 9 C -0.158 4.158 10 C 0.106 3.894 11 N -0.330 5.330 12 C -0.298 4.298 13 H 0.121 0.879 14 C 0.048 3.952 15 N -0.824 5.824 16 Si 0.940 3.060 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.258 1.258 20 H 0.390 0.610 21 H 0.408 0.592 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -0.707 -0.818 2.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.018 4.018 3 C -0.301 4.301 4 C 0.197 3.803 5 N -0.343 5.343 6 S -0.585 6.585 7 C 0.058 3.942 8 C -0.107 4.107 9 C -0.197 4.197 10 C -0.016 4.016 11 N 0.003 4.997 12 C -0.429 4.429 13 H 0.138 0.862 14 C -0.166 4.166 15 N -0.453 5.453 16 Si 0.763 3.237 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.182 1.182 20 H 0.220 0.780 21 H 0.240 0.760 22 H 0.130 0.870 23 H 0.123 0.877 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.956 -0.236 -1.054 1.442 hybrid contribution -1.657 -0.112 -0.117 1.665 sum -0.702 -0.348 -1.170 1.408 Atomic orbital electron populations 1.81073 1.12244 1.12075 1.12767 1.25274 0.92202 0.92277 0.91999 1.14707 0.82989 1.12882 1.19568 1.22306 0.94592 0.82049 0.81369 1.42927 1.09992 1.34878 1.46535 1.92631 0.95248 1.86855 1.83799 1.20800 0.93703 0.91873 0.87784 1.21846 0.89544 0.97905 1.01389 1.23017 0.96910 0.98963 1.00830 1.22615 0.85465 0.89796 1.03706 1.43462 1.10653 1.15847 1.29750 1.20310 0.89434 0.96667 1.36447 0.86194 1.25773 1.00975 0.94064 0.95790 1.69845 1.39078 0.98587 1.37806 0.85642 0.79473 0.79525 0.79090 1.18938 1.19573 1.18166 0.77997 0.75980 0.87041 0.87685 0.90246 0.91393 0.89928 0.89249 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.46 18.12 41.84 0.76 -10.71 15 2 C 0.29 6.44 11.05 -22.47 -0.25 6.20 15 3 C -0.27 -5.78 5.90 -104.63 -0.62 -6.40 15 4 C 0.44 8.69 7.29 -12.82 -0.09 8.60 15 5 N -0.81 -12.66 8.82 32.47 0.29 -12.38 15 6 S -0.72 -15.40 25.26 -107.50 -2.72 -18.11 15 7 C 0.20 4.27 6.55 -80.65 -0.53 3.74 15 8 C -0.07 -1.25 4.48 -26.87 -0.12 -1.37 15 9 C -0.16 -2.51 7.17 -25.20 -0.18 -2.69 15 10 C 0.11 2.01 5.46 -2.77 -0.02 2.00 15 11 N -0.33 -7.16 3.05 -108.78 -0.33 -7.50 15 12 C -0.30 -6.94 8.41 -15.13 -0.13 -7.07 15 13 H 0.12 2.92 5.96 -52.48 -0.31 2.60 15 14 C 0.05 1.07 5.35 -17.46 -0.09 0.98 15 15 N -0.82 -18.37 11.09 55.50 0.62 -17.76 15 16 Si 0.94 18.16 29.56 -169.99 -5.03 13.13 15 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 18 H -0.27 -4.97 7.11 56.52 0.40 -4.56 15 19 H -0.26 -5.02 7.11 56.52 0.40 -4.61 15 20 H 0.39 5.72 7.70 -40.82 -0.31 5.41 15 21 H 0.41 5.51 8.81 -40.82 -0.36 5.15 15 22 H 0.11 2.14 6.54 -44.89 -0.29 1.85 15 23 H 0.11 2.01 6.86 -50.95 -0.35 1.66 15 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.08 1.61 8.08 -51.93 -0.42 1.19 15 27 H 0.09 1.74 7.26 -51.93 -0.38 1.36 15 28 H 0.29 5.98 8.31 -40.82 -0.34 5.64 15 LS Contribution 254.69 15.07 3.84 3.84 Total: -1.00 -26.45 254.69 -7.01 -33.46 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -2.41 Total: 12.03 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.02 Total: 3.99 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 1.33 Total: -48.34 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: -15.40 SS G_CDS: -2.72 Total: -18.11 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.45 -7.01 -33.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012341503.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.782 kcal (2) G-P(sol) polarization free energy of solvation -26.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds