Wall clock time and date at job start Sun Mar 29 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.46740 * 119.99943 * 319.89087 * 3 2 1 5 5 N 1.34780 * 119.99914 * 359.97438 * 4 3 2 6 6 S 1.71194 * 120.00049 * 179.97438 * 4 3 2 7 7 C 1.37980 * 120.00091 * 139.88665 * 3 2 1 8 8 C 1.51278 * 125.16219 * 180.02562 * 7 3 2 9 9 C 1.54399 * 105.18762 * 182.05208 * 8 7 3 10 10 C 1.54522 * 102.49085 * 15.61218 * 9 8 7 11 11 N 1.35795 * 125.15980 * 359.69144 * 7 3 2 12 12 C 1.36573 * 125.29968 * 339.55936 * 11 7 3 13 13 H 1.08006 * 120.00096 * 338.81864 * 12 11 7 14 14 C 1.39079 * 120.00287 * 158.82062 * 12 11 7 15 15 N 1.31327 * 119.99994 * 351.58960 * 14 12 11 16 16 Si 1.86807 * 120.00291 * 171.58482 * 14 12 11 17 17 H 1.48500 * 109.46817 * 94.71350 * 16 14 12 18 18 H 1.48491 * 109.47388 * 214.71629 * 16 14 12 19 19 H 1.48499 * 109.46906 * 334.71731 * 16 14 12 20 20 H 0.97000 * 120.00209 * 0.02562 * 5 4 3 21 21 H 0.96997 * 119.99912 * 179.97438 * 5 4 3 22 22 H 1.08997 * 110.29953 * 300.98959 * 8 7 3 23 23 H 1.09008 * 110.30114 * 63.12556 * 8 7 3 24 24 H 1.09004 * 110.79864 * 133.86125 * 9 8 7 25 25 H 1.08996 * 110.80925 * 257.35740 * 9 8 7 26 26 H 1.09004 * 110.44593 * 91.74620 * 10 9 8 27 27 H 1.08997 * 110.44848 * 214.29095 * 10 9 8 28 28 H 0.97000 * 120.00249 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3022 -0.9710 0.8187 5 7 2.6286 -1.8636 1.5711 6 16 5.0141 -0.9707 0.8182 7 6 3.2575 0.9148 -0.7699 8 6 4.7641 1.0192 -0.8580 9 6 5.0325 2.2159 -1.7960 10 6 3.6611 2.9270 -1.8313 11 7 2.6867 1.8531 -1.5685 12 6 1.4092 1.8088 -2.0494 13 1 0.8843 0.8663 -2.1018 14 6 0.7841 2.9772 -2.4716 15 7 1.3535 4.1410 -2.2569 16 14 -0.8654 2.8914 -3.3442 17 1 -1.9583 3.0769 -2.3560 18 1 -0.9389 3.9620 -4.3704 19 1 -1.0103 1.5667 -3.9995 20 1 1.6586 -1.8641 1.5711 21 1 3.1139 -2.5061 2.1120 22 1 5.1884 1.2088 0.1280 23 1 5.1824 0.1058 -1.2811 24 1 5.7976 2.8707 -1.3788 25 1 5.3161 1.8722 -2.7907 26 1 3.6087 3.6917 -1.0563 27 1 3.4849 3.3659 -2.8133 28 1 0.9178 4.9560 -2.5517 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012341503.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:18 Heat of formation + Delta-G solvation = 35.706710 kcal Electronic energy + Delta-G solvation = -14609.224834 eV Core-core repulsion = 12171.668757 eV Total energy + Delta-G solvation = -2437.556076 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.92028 -38.05665 -36.54002 -35.50013 -32.83715 -32.24718 -27.70153 -27.37086 -24.56734 -22.65695 -21.40726 -20.19371 -18.90774 -18.27877 -17.20564 -16.73756 -16.27029 -16.04412 -14.98118 -14.61268 -14.39154 -14.10937 -14.00074 -13.76914 -13.47154 -13.24603 -13.05849 -12.56284 -12.44584 -12.31114 -12.21065 -12.10916 -11.75903 -11.25536 -10.73409 -9.25984 -8.93746 -8.59954 -7.98817 -6.30037 0.01790 1.05502 1.27312 1.36151 1.40493 1.44835 1.98156 2.07432 2.58976 2.60173 2.89757 3.04632 3.53574 3.94012 4.13198 4.34630 4.48024 4.66234 4.96001 5.00476 5.09717 5.23211 5.34808 5.47887 5.54740 5.77616 6.02421 6.17426 6.41799 6.71936 7.02994 7.15666 8.10409 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.028133 B = 0.009883 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.016283 B = 2832.566206 C = 3706.053516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.299 3.701 3 C -0.295 4.295 4 C 0.459 3.541 5 N -0.783 5.783 6 S -0.746 6.746 7 C 0.206 3.794 8 C -0.059 4.059 9 C -0.140 4.140 10 C 0.109 3.891 11 N -0.347 5.347 12 C -0.326 4.326 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.842 5.842 16 Si 0.984 3.016 17 H -0.277 1.277 18 H -0.252 1.252 19 H -0.263 1.263 20 H 0.400 0.600 21 H 0.423 0.577 22 H 0.107 0.893 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.445 -0.961 -0.748 2.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.010 4.010 3 C -0.322 4.322 4 C 0.207 3.793 5 N -0.317 5.317 6 S -0.609 6.609 7 C 0.060 3.940 8 C -0.098 4.098 9 C -0.179 4.179 10 C -0.012 4.012 11 N -0.014 5.014 12 C -0.456 4.456 13 H 0.120 0.880 14 C -0.191 4.191 15 N -0.471 5.471 16 Si 0.806 3.194 17 H -0.202 1.202 18 H -0.176 1.176 19 H -0.187 1.187 20 H 0.231 0.769 21 H 0.257 0.743 22 H 0.125 0.875 23 H 0.119 0.881 24 H 0.127 0.873 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.630 -0.504 -0.971 1.963 hybrid contribution -1.814 -0.173 -0.001 1.822 sum -0.184 -0.676 -0.972 1.198 Atomic orbital electron populations 1.81060 1.12839 1.12891 1.13639 1.25437 0.92381 0.91764 0.91461 1.14941 0.82666 1.13980 1.20572 1.22123 0.94014 0.82037 0.81109 1.42836 1.10593 1.33525 1.44791 1.92711 0.96336 1.87418 1.84476 1.21320 0.95104 0.90887 0.86661 1.21741 0.87535 0.98797 1.01701 1.23000 0.95798 0.97841 1.01289 1.22620 0.86450 0.89326 1.02822 1.43639 1.10740 1.16700 1.30355 1.20185 0.90529 0.96389 1.38449 0.87965 1.26291 1.02890 0.93800 0.96078 1.69864 1.39915 0.98833 1.38508 0.85015 0.76376 0.79657 0.78361 1.20249 1.17554 1.18744 0.76903 0.74288 0.87506 0.88080 0.87318 0.89867 0.90936 0.90034 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.89 18.12 19.00 0.34 -23.54 15 2 C 0.30 13.06 11.05 88.33 0.98 14.04 15 3 C -0.29 -12.17 5.90 -19.87 -0.12 -12.29 15 4 C 0.46 17.12 7.29 86.46 0.63 17.75 15 5 N -0.78 -22.72 8.82 -51.18 -0.45 -23.17 15 6 S -0.75 -30.34 25.26 -56.49 -1.43 -31.76 15 7 C 0.21 8.47 6.55 42.07 0.28 8.74 15 8 C -0.06 -2.06 4.48 30.51 0.14 -1.92 15 9 C -0.14 -4.13 7.17 31.59 0.23 -3.91 15 10 C 0.11 4.05 5.46 86.73 0.47 4.52 15 11 N -0.35 -14.96 3.05 -498.07 -1.52 -16.48 15 12 C -0.33 -15.29 8.41 84.16 0.71 -14.58 15 13 H 0.10 5.07 5.96 -2.91 -0.02 5.05 15 14 C 0.02 0.95 5.35 84.97 0.45 1.41 15 15 N -0.84 -37.44 11.09 21.68 0.24 -37.20 15 16 Si 0.98 37.15 29.56 68.60 2.03 39.18 15 17 H -0.28 -10.91 7.11 99.48 0.71 -10.20 15 18 H -0.25 -8.63 7.11 99.48 0.71 -7.93 15 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 15 20 H 0.40 10.84 7.70 -92.71 -0.71 10.13 15 21 H 0.42 10.23 8.81 -92.71 -0.82 9.41 15 22 H 0.11 3.91 6.54 -6.87 -0.04 3.86 15 23 H 0.10 3.69 6.86 -3.00 -0.02 3.67 15 24 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.07 2.79 8.08 -2.38 -0.02 2.77 15 27 H 0.08 3.13 7.26 -2.39 -0.02 3.11 15 28 H 0.29 12.08 8.31 -92.71 -0.77 11.31 15 Total: -1.00 -55.23 254.69 2.64 -52.59 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.34 Total: 26.63 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 3.76 Total: 13.75 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -1.39 Total: -100.39 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 16 Polarization: -30.34 SS G_CDS: -1.43 Total: -31.76 kcal Total: -55.23 2.64 -52.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012341503.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.300 kcal (2) G-P(sol) polarization free energy of solvation -55.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds