Wall clock time and date at job start Sun Mar 29 2020 22:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86796 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47304 * 270.00373 * 3 2 1 5 5 H 1.48494 * 109.47423 * 30.00334 * 3 2 1 6 6 H 1.48507 * 109.47014 * 150.00399 * 3 2 1 7 7 C 1.40054 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99989 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99683 * 359.97438 * 7 2 1 10 10 O 1.21681 * 120.00395 * 4.98989 * 9 7 2 11 11 N 1.34779 * 119.99793 * 184.99371 * 9 7 2 12 12 C 1.47069 * 120.87014 * 174.74011 * 11 9 7 13 13 C 1.53190 * 108.56875 * 115.11077 * 12 11 9 14 14 C 1.51404 * 109.06524 * 45.55633 * 13 12 11 15 15 S 1.75906 * 125.06024 * 161.90018 * 14 13 12 16 16 C 1.75722 * 91.10970 * 179.66945 * 15 14 13 17 17 C 1.32920 * 109.59325 * 0.10513 * 16 15 14 18 18 C 1.34646 * 125.09611 * 341.80760 * 14 13 12 19 19 C 1.46975 * 120.86642 * 354.75793 * 11 9 7 20 20 H 0.97005 * 120.00086 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.61726 * 234.83356 * 12 11 9 22 22 H 1.08998 * 109.62010 * 355.20330 * 12 11 9 23 23 H 1.08998 * 109.53926 * 165.43107 * 13 12 11 24 24 H 1.09000 * 109.54217 * 285.59837 * 13 12 11 25 25 H 1.08001 * 125.19962 * 180.36847 * 16 15 14 26 26 H 1.07997 * 122.18049 * 180.02562 * 17 16 15 27 27 H 1.08996 * 109.79717 * 105.50151 * 19 11 9 28 28 H 1.09000 * 109.80255 * 344.63424 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4383 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0616 -2.4824 -0.0917 11 7 1.9451 -3.6455 0.1005 12 6 1.2249 -4.9225 0.2180 13 6 1.5174 -5.7639 -1.0283 14 6 3.0022 -5.7155 -1.3204 15 16 3.8682 -6.8539 -2.3443 16 6 5.3811 -6.0036 -2.0686 17 6 5.1695 -4.9670 -1.2640 18 6 3.8567 -4.7941 -0.8369 19 6 3.4145 -3.6730 0.0967 20 1 -0.4850 0.8401 0.0004 21 1 1.5652 -5.4541 1.1066 22 1 0.1541 -4.7332 0.2922 23 1 1.2142 -6.7957 -0.8509 24 1 0.9643 -5.3622 -1.8774 25 1 6.3358 -6.2786 -2.4920 26 1 5.9650 -4.3024 -0.9609 27 1 3.7828 -3.8650 1.1044 28 1 3.8008 -2.7193 -0.2630 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019473728.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:34 Heat of formation + Delta-G solvation = -1.794191 kcal Electronic energy + Delta-G solvation = -14488.532574 eV Core-core repulsion = 12017.057585 eV Total energy + Delta-G solvation = -2471.474989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.95910 -36.81776 -34.27469 -32.48929 -31.47581 -28.88790 -26.53390 -24.75041 -23.18372 -21.85808 -19.24027 -17.80105 -17.18459 -16.07932 -15.51549 -15.09808 -14.41558 -14.13226 -14.04373 -13.22229 -12.77847 -12.58834 -12.41565 -11.98190 -11.52006 -11.41515 -11.20361 -11.04798 -10.95229 -10.78470 -10.34032 -10.23134 -10.08268 -8.88134 -8.29425 -8.03716 -7.62956 -7.30183 -6.22804 -4.67903 1.27672 1.87619 2.23517 2.98449 3.12689 3.19642 3.22478 4.06039 4.47366 4.55214 5.06964 5.18120 5.49335 5.59459 5.62060 5.74047 5.90948 5.99543 6.16860 6.24847 6.36833 6.47382 6.53683 6.65320 6.87461 7.42166 7.53866 8.08233 8.31287 8.99128 9.38158 10.53664 10.72159 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.036263 B = 0.007323 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.960088 B = 3822.414520 C = 4371.964365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.561 3.439 10 O -0.576 6.576 11 N -0.642 5.642 12 C 0.125 3.875 13 C -0.063 4.063 14 C -0.156 4.156 15 S 0.059 5.941 16 C -0.223 4.223 17 C -0.116 4.116 18 C -0.121 4.121 19 C 0.187 3.813 20 H 0.269 0.731 21 H 0.050 0.950 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.160 0.840 26 H 0.138 0.862 27 H 0.060 0.940 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 -9.548 -1.887 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.091 0.909 9 C 0.367 3.633 10 O -0.458 6.458 11 N -0.380 5.380 12 C 0.000 4.000 13 C -0.104 4.104 14 C -0.273 4.273 15 S 0.324 5.676 16 C -0.358 4.358 17 C -0.147 4.147 18 C -0.134 4.134 19 C 0.060 3.940 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.111 0.889 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.177 0.823 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.048 -10.719 -2.795 13.692 hybrid contribution 1.157 1.881 0.615 2.292 sum 9.204 -8.838 -2.180 12.945 Atomic orbital electron populations 1.70011 1.07088 1.27375 1.35097 1.25725 0.94619 1.00317 0.92534 0.86384 0.80198 0.81397 0.78894 1.19704 1.20427 1.18805 1.20971 0.93595 0.89198 1.54255 0.90940 1.18238 0.86909 0.82032 0.76084 1.90590 1.14314 1.85978 1.54949 1.48229 1.04297 1.06002 1.79498 1.21131 0.99420 0.85329 0.94167 1.20731 0.88495 1.00375 1.00811 1.24715 0.99921 0.99211 1.03450 1.83960 1.00726 1.32228 1.50700 1.25193 1.01054 1.02031 1.07555 1.19992 0.96848 0.98657 0.99248 1.20282 0.92350 0.98961 1.01771 1.20341 0.82680 0.95680 0.95299 0.92036 0.93196 0.88946 0.90809 0.90145 0.82265 0.84418 0.92240 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.77 11.84 55.55 0.66 -22.12 15 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 15 3 Si 0.91 19.85 29.56 -169.99 -5.02 14.83 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 7 C -0.54 -15.09 8.82 -35.63 -0.31 -15.41 15 8 H 0.07 1.82 5.85 -52.49 -0.31 1.52 15 9 C 0.56 15.91 7.62 -12.99 -0.10 15.81 15 10 O -0.58 -18.48 14.49 5.21 0.08 -18.41 15 11 N -0.64 -14.74 2.92 -174.74 -0.51 -15.25 15 12 C 0.13 2.46 6.39 -3.63 -0.02 2.44 15 13 C -0.06 -1.08 6.43 -27.44 -0.18 -1.26 15 14 C -0.16 -2.64 6.39 -35.23 -0.23 -2.86 15 15 S 0.06 0.82 23.31 -107.50 -2.51 -1.68 15 16 C -0.22 -2.92 11.20 28.89 0.32 -2.60 15 17 C -0.12 -1.68 10.00 -41.09 -0.41 -2.09 15 18 C -0.12 -2.09 5.86 -104.70 -0.61 -2.70 15 19 C 0.19 3.57 6.46 -4.07 -0.03 3.55 15 20 H 0.27 7.24 8.29 -40.82 -0.34 6.90 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.09 1.98 7.05 -51.93 -0.37 1.61 15 23 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.16 1.61 8.06 -52.49 -0.42 1.19 15 26 H 0.14 1.67 8.06 -52.49 -0.42 1.25 15 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 28 H 0.10 2.01 5.67 -51.93 -0.29 1.72 15 LS Contribution 253.66 15.07 3.82 3.82 Total: -1.00 -33.10 253.66 -7.78 -40.88 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -2.64 Total: 0.72 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.66 Total: -2.79 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.15 Total: -37.37 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.08 Total: -18.41 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.10 -7.78 -40.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019473728.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.090 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds