Wall clock time and date at job start Sun Mar 29 2020 22:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86796 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47304 * 270.00373 * 3 2 1 5 5 H 1.48494 * 109.47423 * 30.00334 * 3 2 1 6 6 H 1.48507 * 109.47014 * 150.00399 * 3 2 1 7 7 C 1.40054 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99989 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99683 * 359.97438 * 7 2 1 10 10 O 1.21681 * 120.00395 * 4.98989 * 9 7 2 11 11 N 1.34779 * 119.99793 * 184.99371 * 9 7 2 12 12 C 1.47069 * 120.87014 * 174.74011 * 11 9 7 13 13 C 1.53190 * 108.56875 * 115.11077 * 12 11 9 14 14 C 1.51404 * 109.06524 * 45.55633 * 13 12 11 15 15 S 1.75906 * 125.06024 * 161.90018 * 14 13 12 16 16 C 1.75722 * 91.10970 * 179.66945 * 15 14 13 17 17 C 1.32920 * 109.59325 * 0.10513 * 16 15 14 18 18 C 1.34646 * 125.09611 * 341.80760 * 14 13 12 19 19 C 1.46975 * 120.86642 * 354.75793 * 11 9 7 20 20 H 0.97005 * 120.00086 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.61726 * 234.83356 * 12 11 9 22 22 H 1.08998 * 109.62010 * 355.20330 * 12 11 9 23 23 H 1.08998 * 109.53926 * 165.43107 * 13 12 11 24 24 H 1.09000 * 109.54217 * 285.59837 * 13 12 11 25 25 H 1.08001 * 125.19962 * 180.36847 * 16 15 14 26 26 H 1.07997 * 122.18049 * 180.02562 * 17 16 15 27 27 H 1.08996 * 109.79717 * 105.50151 * 19 11 9 28 28 H 1.09000 * 109.80255 * 344.63424 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4383 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0616 -2.4824 -0.0917 11 7 1.9451 -3.6455 0.1005 12 6 1.2249 -4.9225 0.2180 13 6 1.5174 -5.7639 -1.0283 14 6 3.0022 -5.7155 -1.3204 15 16 3.8682 -6.8539 -2.3443 16 6 5.3811 -6.0036 -2.0686 17 6 5.1695 -4.9670 -1.2640 18 6 3.8567 -4.7941 -0.8369 19 6 3.4145 -3.6730 0.0967 20 1 -0.4850 0.8401 0.0004 21 1 1.5652 -5.4541 1.1066 22 1 0.1541 -4.7332 0.2922 23 1 1.2142 -6.7957 -0.8509 24 1 0.9643 -5.3622 -1.8774 25 1 6.3358 -6.2786 -2.4920 26 1 5.9650 -4.3024 -0.9609 27 1 3.7828 -3.8650 1.1044 28 1 3.8008 -2.7193 -0.2630 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019473728.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:34 Heat of formation + Delta-G solvation = -23.495888 kcal Electronic energy + Delta-G solvation = -14489.473630 eV Core-core repulsion = 12017.057585 eV Total energy + Delta-G solvation = -2472.416045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51835 -38.55729 -35.94039 -34.60989 -33.06153 -30.24769 -28.56627 -26.34332 -24.60427 -23.29094 -21.03726 -19.15426 -18.76093 -17.88800 -17.25895 -16.58476 -16.06831 -15.70121 -15.55778 -14.82618 -14.28471 -14.15179 -13.93638 -13.45689 -13.26261 -13.08382 -12.74976 -12.67145 -12.57850 -12.22499 -11.98013 -11.94410 -11.60186 -10.93209 -9.85407 -9.43832 -9.27170 -9.08123 -8.29848 -6.85072 0.11353 0.72942 1.11059 1.40811 1.42084 1.57418 1.79530 2.23918 2.45167 2.78203 3.57727 3.79015 3.95457 4.15593 4.29109 4.40819 4.55659 4.67551 4.72332 4.81773 4.87055 5.06605 5.21137 5.35573 5.38959 5.61856 5.77447 6.10045 6.36293 6.87130 7.38305 8.44272 8.66181 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.036263 B = 0.007323 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.960088 B = 3822.414520 C = 4371.964365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.244 1.244 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.543 3.457 10 O -0.630 6.630 11 N -0.647 5.647 12 C 0.122 3.878 13 C -0.055 4.055 14 C -0.191 4.191 15 S 0.098 5.902 16 C -0.207 4.207 17 C -0.132 4.132 18 C -0.132 4.132 19 C 0.184 3.816 20 H 0.274 0.726 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.105 0.895 24 H 0.058 0.942 25 H 0.196 0.804 26 H 0.160 0.840 27 H 0.077 0.923 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.440 -10.043 -2.405 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.167 1.167 7 C -0.604 4.604 8 H 0.112 0.888 9 C 0.349 3.651 10 O -0.517 6.517 11 N -0.383 5.383 12 C -0.003 4.003 13 C -0.095 4.095 14 C -0.308 4.308 15 S 0.363 5.637 16 C -0.342 4.342 17 C -0.162 4.162 18 C -0.145 4.145 19 C 0.059 3.941 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.081 0.919 23 H 0.123 0.877 24 H 0.077 0.923 25 H 0.213 0.787 26 H 0.178 0.822 27 H 0.095 0.905 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.235 -11.274 -3.309 16.257 hybrid contribution 0.214 1.891 0.754 2.047 sum 11.449 -9.383 -2.555 15.021 Atomic orbital electron populations 1.70189 1.09595 1.28953 1.36451 1.26998 0.95493 1.04956 0.91141 0.85048 0.79006 0.75093 0.79377 1.18820 1.19847 1.16743 1.21507 0.94848 0.89692 1.54400 0.88780 1.18646 0.86577 0.83985 0.75867 1.90535 1.16524 1.87298 1.57388 1.48073 1.06172 1.05740 1.78291 1.21260 0.97563 0.84694 0.96819 1.20556 0.89287 1.01288 0.98378 1.24785 0.99753 1.00971 1.05321 1.83828 1.00420 1.30529 1.48924 1.25686 1.02032 1.00623 1.05813 1.20113 0.96071 0.99978 1.00087 1.20264 0.93998 0.98290 1.01961 1.20432 0.80126 0.96508 0.97061 0.91587 0.90800 0.91860 0.87660 0.92347 0.78659 0.82216 0.90523 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.60 11.84 21.84 0.26 -50.34 15 2 C 0.03 1.63 5.50 85.31 0.47 2.10 15 3 Si 1.00 40.67 29.56 68.60 2.03 42.70 15 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 15 6 H -0.24 -9.12 7.11 99.48 0.71 -8.42 15 7 C -0.57 -32.16 8.82 24.83 0.22 -31.94 15 8 H 0.09 4.72 5.85 -2.91 -0.02 4.70 15 9 C 0.54 32.08 7.62 86.36 0.66 32.73 15 10 O -0.63 -42.87 14.49 -4.29 -0.06 -42.93 15 11 N -0.65 -30.45 2.92 -824.96 -2.41 -32.86 15 12 C 0.12 4.91 6.39 86.33 0.55 5.46 15 13 C -0.05 -1.86 6.43 30.14 0.19 -1.67 15 14 C -0.19 -6.19 6.39 25.09 0.16 -6.03 15 15 S 0.10 2.43 23.31 -56.49 -1.32 1.11 15 16 C -0.21 -4.53 11.20 66.65 0.75 -3.78 15 17 C -0.13 -3.39 10.00 21.31 0.21 -3.18 15 18 C -0.13 -4.33 5.86 -19.91 -0.12 -4.45 15 19 C 0.18 6.96 6.46 86.10 0.56 7.52 15 20 H 0.27 15.27 8.29 -92.70 -0.77 14.50 15 21 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 22 H 0.06 2.89 7.05 -2.39 -0.02 2.87 15 23 H 0.11 2.83 8.14 -2.39 -0.02 2.81 15 24 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 25 H 0.20 2.83 8.06 -2.91 -0.02 2.81 15 26 H 0.16 3.30 8.06 -2.91 -0.02 3.28 15 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 28 H 0.09 3.63 5.67 -2.39 -0.01 3.61 15 Total: -1.00 -75.14 253.66 3.33 -71.81 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.18 Total: 13.75 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 3.65 Total: -3.24 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -2.15 Total: -83.20 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.06 Total: -42.93 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.32 Total: 1.11 kcal Total: -75.14 3.33 -71.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019473728.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.310 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds