Wall clock time and date at job start Sun Mar 29 2020 22:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99606 * 2 1 4 4 C 1.39359 * 119.99724 * 180.02562 * 3 2 1 5 5 C 1.37734 * 120.00105 * 180.30014 * 4 3 2 6 6 C 1.39350 * 119.99468 * 359.44625 * 5 4 3 7 7 N 1.39144 * 120.00056 * 180.28053 * 6 5 4 8 8 C 1.34780 * 119.99587 * 33.70452 * 7 6 5 9 9 O 1.21846 * 120.00078 * 5.28000 * 8 7 6 10 10 C 1.41362 * 119.99905 * 185.27873 * 8 7 6 11 11 H 1.08006 * 119.99689 * 0.02562 * 10 8 7 12 12 C 1.40135 * 119.99963 * 180.02562 * 10 8 7 13 13 N 1.30626 * 120.00229 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99673 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47138 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46974 * 120.00135 * 14 12 10 17 17 H 1.48495 * 109.47045 * 239.99864 * 14 12 10 18 18 C 1.39351 * 120.00444 * 0.54879 * 6 5 4 19 19 C 1.37737 * 120.00028 * 359.72832 * 18 6 5 20 20 H 1.09005 * 109.47200 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47727 * 300.00312 * 1 2 3 22 22 H 1.09005 * 109.47136 * 60.00273 * 1 2 3 23 23 H 1.08003 * 119.99726 * 0.02562 * 4 3 2 24 24 H 1.08001 * 120.00200 * 179.71722 * 5 4 3 25 25 H 0.96993 * 120.00116 * 213.71407 * 7 6 5 26 26 H 0.96997 * 120.00121 * 179.97438 * 13 12 10 27 27 H 1.07999 * 119.99874 * 179.70752 * 18 6 5 28 28 H 1.08001 * 120.00191 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.5429 2.1244 -0.0005 5 6 3.8528 3.4664 0.0057 6 6 2.8336 4.4167 0.0009 7 7 3.1465 5.7725 0.0013 8 6 4.2469 6.2103 -0.6422 9 8 4.9145 5.4351 -1.3040 10 6 4.6264 7.5688 -0.5493 11 1 4.0348 8.2558 0.0377 12 6 5.7702 8.0241 -1.2188 13 7 6.4854 7.1933 -1.9291 14 14 6.2713 9.8195 -1.0965 15 1 5.3018 10.5467 -0.2384 16 1 7.6281 9.9152 -0.5005 17 1 6.2829 10.4236 -2.4530 18 6 1.5009 4.0093 0.0013 19 6 1.1911 2.6672 0.0009 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 4.3328 1.3878 -0.0014 24 1 4.8856 3.7822 0.0099 25 1 2.5728 6.4025 0.4648 26 1 7.2769 7.5085 -2.3928 27 1 0.7111 4.7459 0.0024 28 1 0.1583 2.3515 0.0016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019503172.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:46 Heat of formation + Delta-G solvation = -15.594037 kcal Electronic energy + Delta-G solvation = -13900.485400 eV Core-core repulsion = 11428.412005 eV Total energy + Delta-G solvation = -2472.073395 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.14585 -36.98990 -33.57399 -32.45550 -30.72878 -29.33885 -28.54307 -26.46254 -22.44076 -22.05672 -19.88750 -17.59620 -17.27560 -16.28640 -15.62653 -14.66789 -14.53138 -14.02523 -13.90331 -13.73322 -13.15796 -12.89404 -12.62485 -12.47900 -12.06995 -11.54473 -11.29336 -11.16321 -10.83790 -10.64076 -10.34388 -10.03668 -9.72319 -9.01131 -8.51450 -8.02624 -7.72918 -6.63319 -6.41659 -4.95255 1.78572 1.80005 1.93405 2.67220 3.01419 3.10352 3.14835 3.94605 4.15339 4.47607 4.65017 5.04555 5.05614 5.27242 5.35415 5.61042 5.67667 5.88679 6.06267 6.18175 6.50463 6.63568 6.89184 7.05569 7.19074 7.32237 7.83474 7.99107 8.16336 8.75932 9.24087 10.33874 10.54462 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.075424 B = 0.004976 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.144588 B = 5625.195789 C = 5897.802475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.144 6.144 3 C -0.135 4.135 4 C -0.074 4.074 5 C -0.115 4.115 6 C 0.200 3.800 7 N -0.700 5.700 8 C 0.541 3.459 9 O -0.566 6.566 10 C -0.537 4.537 11 H 0.071 0.929 12 C 0.087 3.913 13 N -0.745 5.745 14 Si 0.913 3.087 15 H -0.262 1.262 16 H -0.273 1.273 17 H -0.274 1.274 18 C -0.166 4.166 19 C -0.107 4.107 20 H 0.101 0.899 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.121 0.879 24 H 0.144 0.856 25 H 0.392 0.608 26 H 0.273 0.727 27 H 0.119 0.881 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.400 -6.827 4.531 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.095 5.905 3 C -0.248 4.248 4 C -0.098 4.098 5 C -0.137 4.137 6 C 0.098 3.902 7 N -0.343 5.343 8 C 0.351 3.649 9 O -0.450 6.450 10 C -0.572 4.572 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.372 5.372 14 Si 0.737 3.263 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.189 4.189 19 C -0.130 4.130 20 H 0.119 0.881 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.139 0.861 24 H 0.161 0.839 25 H 0.226 0.774 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.037 -8.330 3.921 12.221 hybrid contribution -0.964 2.364 0.198 2.561 sum -9.001 -5.965 4.119 11.557 Atomic orbital electron populations 1.23556 0.95540 1.06288 1.05334 1.85166 1.05693 1.05451 1.94210 1.21438 0.96617 0.94823 1.11934 1.20601 0.93661 0.95766 0.99726 1.21308 1.00621 0.91017 1.00772 1.18082 0.92239 0.86050 0.93817 1.44178 1.30069 1.04008 1.56024 1.16992 0.78679 0.89835 0.79422 1.90687 1.53103 1.57525 1.43647 1.20013 1.10975 0.94217 1.32019 0.91108 1.25777 0.95346 0.99346 0.93142 1.70016 1.11675 1.35320 1.20216 0.86220 0.79099 0.82133 0.78828 1.18549 1.19876 1.19906 1.20770 0.94975 0.95416 1.07783 1.20742 0.97253 0.92581 1.02461 0.88074 0.90134 0.90088 0.86150 0.83881 0.77449 0.91616 0.86282 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.15 101.05 0.92 -0.45 15 2 S -0.14 -2.03 22.56 -107.50 -2.43 -4.45 15 3 C -0.13 -2.30 6.13 -38.75 -0.24 -2.54 15 4 C -0.07 -1.40 9.79 -39.35 -0.39 -1.78 15 5 C -0.11 -2.49 8.63 -39.35 -0.34 -2.83 15 6 C 0.20 4.22 6.28 -83.71 -0.53 3.69 15 7 N -0.70 -15.69 5.30 -12.47 -0.07 -15.75 15 8 C 0.54 14.88 7.28 -15.07 -0.11 14.77 15 9 O -0.57 -17.57 12.56 5.06 0.06 -17.50 15 10 C -0.54 -14.45 9.29 -37.68 -0.35 -14.80 15 11 H 0.07 1.73 7.85 -52.48 -0.41 1.32 15 12 C 0.09 2.32 5.50 -17.35 -0.10 2.22 15 13 N -0.74 -21.30 11.72 55.55 0.65 -20.65 15 14 Si 0.91 19.12 29.56 -169.99 -5.02 14.10 15 15 H -0.26 -5.29 7.11 56.52 0.40 -4.88 15 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 18 C -0.17 -2.92 9.96 -39.35 -0.39 -3.31 15 19 C -0.11 -1.72 9.36 -39.35 -0.37 -2.09 15 20 H 0.10 0.79 8.14 -51.92 -0.42 0.37 15 21 H 0.08 0.74 7.74 -51.92 -0.40 0.34 15 22 H 0.08 0.78 7.75 -51.92 -0.40 0.38 15 23 H 0.12 2.07 8.06 -52.48 -0.42 1.65 15 24 H 0.14 3.50 6.43 -52.49 -0.34 3.16 15 25 H 0.39 7.46 8.77 -40.82 -0.36 7.10 15 26 H 0.27 7.01 8.29 -40.82 -0.34 6.68 15 27 H 0.12 1.80 8.06 -52.49 -0.42 1.37 15 28 H 0.12 1.50 5.88 -52.49 -0.31 1.19 15 LS Contribution 261.35 15.07 3.94 3.94 Total: -1.00 -31.87 261.35 -7.36 -39.23 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.62 Total: 8.21 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.88 Total: -7.12 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.59 Total: -36.40 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.06 Total: -17.50 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.43 Total: -4.45 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.87 -7.36 -39.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019503172.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.638 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds