Wall clock time and date at job start Sun Mar 29 2020 22:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99606 * 2 1 4 4 C 1.39359 * 119.99724 * 180.02562 * 3 2 1 5 5 C 1.37734 * 120.00105 * 180.30014 * 4 3 2 6 6 C 1.39350 * 119.99468 * 359.44625 * 5 4 3 7 7 N 1.39144 * 120.00056 * 180.28053 * 6 5 4 8 8 C 1.34780 * 119.99587 * 33.70452 * 7 6 5 9 9 O 1.21846 * 120.00078 * 5.28000 * 8 7 6 10 10 C 1.41362 * 119.99905 * 185.27873 * 8 7 6 11 11 H 1.08006 * 119.99689 * 0.02562 * 10 8 7 12 12 C 1.40135 * 119.99963 * 180.02562 * 10 8 7 13 13 N 1.30626 * 120.00229 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99673 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47138 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46974 * 120.00135 * 14 12 10 17 17 H 1.48495 * 109.47045 * 239.99864 * 14 12 10 18 18 C 1.39351 * 120.00444 * 0.54879 * 6 5 4 19 19 C 1.37737 * 120.00028 * 359.72832 * 18 6 5 20 20 H 1.09005 * 109.47200 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47727 * 300.00312 * 1 2 3 22 22 H 1.09005 * 109.47136 * 60.00273 * 1 2 3 23 23 H 1.08003 * 119.99726 * 0.02562 * 4 3 2 24 24 H 1.08001 * 120.00200 * 179.71722 * 5 4 3 25 25 H 0.96993 * 120.00116 * 213.71407 * 7 6 5 26 26 H 0.96997 * 120.00121 * 179.97438 * 13 12 10 27 27 H 1.07999 * 119.99874 * 179.70752 * 18 6 5 28 28 H 1.08001 * 120.00191 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.5429 2.1244 -0.0005 5 6 3.8528 3.4664 0.0057 6 6 2.8336 4.4167 0.0009 7 7 3.1465 5.7725 0.0013 8 6 4.2469 6.2103 -0.6422 9 8 4.9145 5.4351 -1.3040 10 6 4.6264 7.5688 -0.5493 11 1 4.0348 8.2558 0.0377 12 6 5.7702 8.0241 -1.2188 13 7 6.4854 7.1933 -1.9291 14 14 6.2713 9.8195 -1.0965 15 1 5.3018 10.5467 -0.2384 16 1 7.6281 9.9152 -0.5005 17 1 6.2829 10.4236 -2.4530 18 6 1.5009 4.0093 0.0013 19 6 1.1911 2.6672 0.0009 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 4.3328 1.3878 -0.0014 24 1 4.8856 3.7822 0.0099 25 1 2.5728 6.4025 0.4648 26 1 7.2769 7.5085 -2.3928 27 1 0.7111 4.7459 0.0024 28 1 0.1583 2.3515 0.0016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019503172.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:46 Heat of formation + Delta-G solvation = -36.877749 kcal Electronic energy + Delta-G solvation = -13901.408331 eV Core-core repulsion = 11428.412005 eV Total energy + Delta-G solvation = -2472.996326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81984 -38.78042 -35.40562 -34.49705 -32.12056 -30.87932 -29.59074 -28.36697 -24.09252 -23.54961 -21.70113 -19.48912 -18.63248 -17.85766 -17.62245 -16.24874 -15.81618 -15.62375 -15.37486 -14.79871 -14.65159 -14.51162 -14.29533 -13.65373 -13.55903 -13.16233 -12.85341 -12.77484 -12.67614 -12.28048 -11.99301 -11.35535 -11.12859 -10.96248 -10.06296 -9.81047 -9.50181 -8.40923 -8.03136 -7.04109 0.30363 0.46981 0.68906 1.37841 1.39104 1.57560 1.60096 2.19684 2.32555 2.79491 2.99337 3.63193 3.93339 3.99633 4.34680 4.36177 4.44255 4.57231 4.68429 4.91381 5.04450 5.18777 5.20897 5.37136 5.49981 5.78416 5.87554 6.16419 6.39394 6.71314 7.38075 8.36402 8.54780 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.075424 B = 0.004976 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.144588 B = 5625.195789 C = 5897.802475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.156 6.156 3 C -0.131 4.131 4 C -0.086 4.086 5 C -0.140 4.140 6 C 0.163 3.837 7 N -0.694 5.694 8 C 0.527 3.473 9 O -0.615 6.615 10 C -0.563 4.563 11 H 0.092 0.908 12 C 0.030 3.970 13 N -0.800 5.800 14 Si 1.003 2.997 15 H -0.244 1.244 16 H -0.268 1.268 17 H -0.267 1.267 18 C -0.151 4.151 19 C -0.100 4.100 20 H 0.127 0.873 21 H 0.095 0.905 22 H 0.090 0.910 23 H 0.126 0.874 24 H 0.099 0.901 25 H 0.407 0.593 26 H 0.279 0.721 27 H 0.150 0.850 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 -6.691 5.189 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.083 5.917 3 C -0.244 4.244 4 C -0.110 4.110 5 C -0.163 4.163 6 C 0.063 3.937 7 N -0.338 5.338 8 C 0.337 3.663 9 O -0.503 6.503 10 C -0.598 4.598 11 H 0.110 0.890 12 C -0.188 4.188 13 N -0.428 5.428 14 Si 0.822 3.178 15 H -0.167 1.167 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.174 4.174 19 C -0.123 4.123 20 H 0.146 0.854 21 H 0.114 0.886 22 H 0.109 0.891 23 H 0.144 0.856 24 H 0.117 0.883 25 H 0.243 0.757 26 H 0.090 0.910 27 H 0.168 0.832 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.913 -8.231 4.615 14.427 hybrid contribution -0.234 2.078 0.026 2.091 sum -11.147 -6.153 4.641 13.552 Atomic orbital electron populations 1.23754 0.91239 1.08510 1.06541 1.85303 1.10333 1.02383 1.93644 1.21769 0.95897 0.97419 1.09307 1.20663 0.95393 0.94630 1.00271 1.21066 0.98991 0.92901 1.03363 1.18324 0.93793 0.85078 0.96545 1.43675 1.29149 1.05148 1.55841 1.17359 0.79465 0.90146 0.79336 1.90645 1.55076 1.58710 1.45838 1.20548 1.11948 0.94577 1.32710 0.88967 1.27069 0.94794 1.05063 0.91911 1.70174 1.12601 1.38457 1.21602 0.84891 0.78944 0.74725 0.79272 1.16714 1.19233 1.19158 1.21083 0.93771 0.97000 1.05563 1.21226 0.99041 0.91589 1.00486 0.85419 0.88628 0.89068 0.85628 0.88286 0.75704 0.91045 0.83190 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.15 113.37 1.04 -0.94 15 2 S -0.16 -3.97 22.56 -56.49 -1.27 -5.25 15 3 C -0.13 -4.25 6.13 22.81 0.14 -4.11 15 4 C -0.09 -3.35 9.79 22.42 0.22 -3.13 15 5 C -0.14 -6.50 8.63 22.42 0.19 -6.31 15 6 C 0.16 7.03 6.28 38.52 0.24 7.27 15 7 N -0.69 -32.03 5.30 -311.51 -1.65 -33.68 15 8 C 0.53 30.38 7.28 85.01 0.62 31.00 15 9 O -0.62 -40.76 12.56 -4.81 -0.06 -40.82 15 10 C -0.56 -31.00 9.29 23.50 0.22 -30.79 15 11 H 0.09 4.48 7.85 -2.91 -0.02 4.46 15 12 C 0.03 1.62 5.50 85.33 0.47 2.09 15 13 N -0.80 -47.73 11.72 21.85 0.26 -47.47 15 14 Si 1.00 39.34 29.56 68.60 2.03 41.36 15 15 H -0.24 -8.79 7.11 99.48 0.71 -8.09 15 16 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 17 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 18 C -0.15 -5.03 9.96 22.42 0.22 -4.81 15 19 C -0.10 -2.90 9.36 22.42 0.21 -2.69 15 20 H 0.13 1.33 8.14 -2.39 -0.02 1.31 15 21 H 0.09 1.22 7.74 -2.39 -0.02 1.20 15 22 H 0.09 1.26 7.75 -2.39 -0.02 1.24 15 23 H 0.13 4.56 8.06 -2.91 -0.02 4.53 15 24 H 0.10 5.39 6.43 -2.91 -0.02 5.37 15 25 H 0.41 15.57 8.77 -92.71 -0.81 14.76 15 26 H 0.28 14.95 8.29 -92.71 -0.77 14.18 15 27 H 0.15 3.99 8.06 -2.91 -0.02 3.97 15 28 H 0.16 3.23 5.88 -2.91 -0.02 3.22 15 Total: -1.00 -74.15 261.35 3.25 -70.91 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.38 Total: 27.36 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 3.57 Total: -12.40 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -1.39 Total: -81.15 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.06 Total: -40.82 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -1.27 Total: -5.25 kcal Total: -74.15 3.25 -70.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019503172.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.028 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds