Wall clock time and date at job start Sun Mar 29 2020 22:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29364 * 1 3 3 Si 1.86804 * 119.99998 * 2 1 4 4 H 1.48497 * 109.46612 * 269.99518 * 3 2 1 5 5 H 1.48499 * 109.47274 * 29.99309 * 3 2 1 6 6 H 1.48492 * 109.47159 * 149.99434 * 3 2 1 7 7 C 1.46620 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00429 * 0.02562 * 7 2 1 9 9 O 1.22360 * 119.99834 * 180.02562 * 7 2 1 10 10 C 1.35605 * 116.99657 * 185.08185 * 9 7 2 11 11 C 1.39161 * 119.89969 * 354.24032 * 10 9 7 12 12 C 1.37617 * 120.09893 * 179.76402 * 11 10 9 13 13 C 1.40009 * 119.89932 * 0.50513 * 12 11 10 14 14 C 1.46986 * 120.10523 * 179.76268 * 13 12 11 15 15 O 1.21281 * 119.99538 * 359.97438 * 14 13 12 16 16 C 1.39976 * 119.79532 * 359.75027 * 13 12 11 17 17 C 1.37650 * 119.90183 * 359.97438 * 16 13 12 18 18 N 1.48015 * 119.95579 * 180.02562 * 17 16 13 19 19 O 1.31706 * 119.99412 * 359.97438 * 18 17 16 20 20 O 1.31700 * 120.00337 * 179.97438 * 18 17 16 21 21 H 0.97004 * 120.00223 * 0.02562 * 1 2 3 22 22 H 1.07993 * 119.95051 * 0.02562 * 11 10 9 23 23 H 1.08003 * 120.05109 * 180.25701 * 12 11 10 24 24 H 1.07995 * 120.00434 * 179.97438 * 14 13 12 25 25 H 1.08002 * 120.04632 * 180.02562 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 2.4752 2.0463 -1.4001 5 1 1.4251 2.6528 0.6999 6 1 3.5251 1.4403 0.7001 7 6 2.0267 -1.2698 0.0006 8 1 1.4868 -2.2051 0.0006 9 8 3.2503 -1.2697 0.0010 10 6 3.8660 -2.4733 -0.1055 11 6 3.1114 -3.6424 -0.0879 12 6 3.7315 -4.8658 -0.2006 13 6 5.1246 -4.9335 -0.3224 14 6 5.7920 -6.2380 -0.4378 15 8 5.1358 -7.2579 -0.4272 16 6 5.8799 -3.7551 -0.3342 17 6 5.2506 -2.5356 -0.2267 18 7 6.0480 -1.2887 -0.2396 19 8 7.3589 -1.3467 -0.3535 20 8 5.4468 -0.1214 -0.1373 21 1 -0.4851 0.8401 -0.0004 22 1 2.0372 -3.5894 0.0100 23 1 3.1447 -5.7725 -0.1911 24 1 6.8667 -6.2884 -0.5321 25 1 6.9547 -3.8026 -0.4284 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022027329.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:49 Heat of formation + Delta-G solvation = 8.700941 kcal Electronic energy + Delta-G solvation = -16153.391000 eV Core-core repulsion = 13103.785149 eV Total energy + Delta-G solvation = -3049.605851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.54438 -38.93350 -37.72913 -36.39753 -34.15239 -32.89098 -30.89037 -30.41544 -26.74339 -25.30093 -23.80191 -22.10613 -20.35145 -19.40031 -18.59647 -16.87629 -16.72089 -15.72452 -15.67257 -15.44727 -15.11761 -14.50038 -14.41238 -14.05520 -13.72462 -13.22901 -12.92376 -12.24846 -11.83765 -11.52049 -11.31804 -10.74497 -10.50594 -9.99306 -9.88386 -9.65930 -9.44339 -9.33928 -8.82412 -8.20741 -7.97512 -4.66586 0.44205 1.13643 2.22139 2.56596 2.60677 2.68965 2.83076 2.94917 3.55729 3.65107 3.76268 4.29060 4.73268 5.16391 5.50181 5.59047 5.63309 5.92082 6.10329 6.24334 6.33385 6.47126 6.70085 6.91668 7.01608 7.11808 7.42114 7.89752 8.26218 8.55778 8.91953 Molecular weight = 237.05amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.008751 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.080929 B = 3198.765678 C = 4186.616009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.068 3.932 3 Si 0.912 3.088 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.214 1.214 7 C -0.289 4.289 8 H 0.127 0.873 9 O -0.026 6.026 10 C 0.040 3.960 11 C -0.199 4.199 12 C -0.017 4.017 13 C -0.302 4.302 14 C 0.392 3.608 15 O -0.494 6.494 16 C 0.062 3.938 17 C -0.081 4.081 18 N 0.031 4.969 19 O -0.324 6.324 20 O -0.269 6.269 21 H 0.320 0.680 22 H 0.140 0.860 23 H 0.127 0.873 24 H 0.091 0.909 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -1.894 0.044 1.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.162 4.162 3 Si 0.730 3.270 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.135 1.135 7 C -0.371 4.371 8 H 0.144 0.856 9 O 0.094 5.906 10 C -0.023 4.023 11 C -0.218 4.218 12 C -0.036 4.036 13 C -0.307 4.307 14 C 0.255 3.745 15 O -0.372 6.372 16 C 0.042 3.958 17 C -0.181 4.181 18 N 0.451 4.549 19 O -0.473 6.473 20 O -0.431 6.431 21 H 0.134 0.866 22 H 0.157 0.843 23 H 0.145 0.855 24 H 0.107 0.893 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.709 -2.292 0.078 2.401 hybrid contribution 0.099 1.012 0.022 1.017 sum -0.609 -1.280 0.100 1.422 Atomic orbital electron populations 1.68508 1.08488 1.34018 1.23717 1.27046 0.95331 1.00954 0.92878 0.85942 0.82396 0.76316 0.82357 1.17346 1.18908 1.13543 1.21825 0.81367 0.97768 1.36183 0.85581 1.80106 1.22114 1.31100 1.57303 1.18174 0.89119 0.83188 1.11866 1.20593 1.00095 0.90621 1.10464 1.20860 0.93263 0.96662 0.92861 1.20010 0.94644 0.94096 1.21920 1.23553 0.94051 0.86561 0.70295 1.90456 1.70078 1.37591 1.39059 1.20753 1.00013 0.88927 0.86136 1.18721 0.87142 0.82977 1.29296 1.49706 1.02144 1.03325 0.99687 1.96101 0.90705 1.95904 1.64618 1.96180 1.72809 1.12992 1.61097 0.86612 0.84260 0.85510 0.89324 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -14.27 13.88 55.99 0.78 -13.49 15 2 C 0.07 1.37 5.69 -15.21 -0.09 1.28 15 3 Si 0.91 16.89 28.83 -169.99 -4.90 11.99 15 4 H -0.25 -4.67 7.11 56.52 0.40 -4.27 15 5 H -0.26 -4.45 7.11 56.52 0.40 -4.04 15 6 H -0.21 -4.46 6.66 56.52 0.38 -4.08 15 7 C -0.29 -6.21 9.98 34.11 0.34 -5.87 15 8 H 0.13 2.61 5.12 -52.49 -0.27 2.34 15 9 O -0.03 -0.59 6.13 -0.89 -0.01 -0.60 15 10 C 0.04 0.88 6.59 -38.91 -0.26 0.63 15 11 C -0.20 -3.78 9.10 -39.47 -0.36 -4.14 15 12 C -0.02 -0.30 9.59 -39.14 -0.38 -0.68 15 13 C -0.30 -5.19 5.87 -105.04 -0.62 -5.80 15 14 C 0.39 5.91 11.45 34.27 0.39 6.30 15 15 O -0.49 -8.92 17.16 5.56 0.10 -8.83 15 16 C 0.06 1.13 9.31 -39.15 -0.36 0.77 15 17 C -0.08 -1.79 6.89 -79.83 -0.55 -2.34 15 18 N 0.03 0.78 4.98 34.02 0.17 0.95 15 19 O -0.32 -8.11 19.14 -31.57 -0.60 -8.72 15 20 O -0.27 -7.13 17.43 -39.23 -0.68 -7.81 15 21 H 0.32 5.45 8.26 -40.82 -0.34 5.11 15 22 H 0.14 2.46 5.67 -52.49 -0.30 2.16 15 23 H 0.13 2.07 7.64 -52.48 -0.40 1.66 15 24 H 0.09 1.00 8.06 -52.49 -0.42 0.57 15 25 H 0.14 2.30 7.57 -52.49 -0.40 1.90 15 LS Contribution 245.22 15.07 3.70 3.70 Total: -1.00 -27.03 245.22 -4.28 -31.31 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -0.95 Total: 1.35 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.88 Total: -9.85 kcal Atomic # 7 Polarization: -13.49 SS G_CDS: 0.95 Total: -12.54 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.20 Total: -25.96 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -4.90 Total: 11.99 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.03 -4.28 -31.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022027329.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.010 kcal (2) G-P(sol) polarization free energy of solvation -27.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds