Wall clock time and date at job start Sun Mar 29 2020 22:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29364 * 1 3 3 Si 1.86804 * 119.99998 * 2 1 4 4 H 1.48497 * 109.46612 * 269.99518 * 3 2 1 5 5 H 1.48499 * 109.47274 * 29.99309 * 3 2 1 6 6 H 1.48492 * 109.47159 * 149.99434 * 3 2 1 7 7 C 1.46620 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00429 * 0.02562 * 7 2 1 9 9 O 1.22360 * 119.99834 * 180.02562 * 7 2 1 10 10 C 1.35605 * 116.99657 * 185.08185 * 9 7 2 11 11 C 1.39161 * 119.89969 * 354.24032 * 10 9 7 12 12 C 1.37617 * 120.09893 * 179.76402 * 11 10 9 13 13 C 1.40009 * 119.89932 * 0.50513 * 12 11 10 14 14 C 1.46986 * 120.10523 * 179.76268 * 13 12 11 15 15 O 1.21281 * 119.99538 * 359.97438 * 14 13 12 16 16 C 1.39976 * 119.79532 * 359.75027 * 13 12 11 17 17 C 1.37650 * 119.90183 * 359.97438 * 16 13 12 18 18 N 1.48015 * 119.95579 * 180.02562 * 17 16 13 19 19 O 1.31706 * 119.99412 * 359.97438 * 18 17 16 20 20 O 1.31700 * 120.00337 * 179.97438 * 18 17 16 21 21 H 0.97004 * 120.00223 * 0.02562 * 1 2 3 22 22 H 1.07993 * 119.95051 * 0.02562 * 11 10 9 23 23 H 1.08003 * 120.05109 * 180.25701 * 12 11 10 24 24 H 1.07995 * 120.00434 * 179.97438 * 14 13 12 25 25 H 1.08002 * 120.04632 * 180.02562 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 2.4752 2.0463 -1.4001 5 1 1.4251 2.6528 0.6999 6 1 3.5251 1.4403 0.7001 7 6 2.0267 -1.2698 0.0006 8 1 1.4868 -2.2051 0.0006 9 8 3.2503 -1.2697 0.0010 10 6 3.8660 -2.4733 -0.1055 11 6 3.1114 -3.6424 -0.0879 12 6 3.7315 -4.8658 -0.2006 13 6 5.1246 -4.9335 -0.3224 14 6 5.7920 -6.2380 -0.4378 15 8 5.1358 -7.2579 -0.4272 16 6 5.8799 -3.7551 -0.3342 17 6 5.2506 -2.5356 -0.2267 18 7 6.0480 -1.2887 -0.2396 19 8 7.3589 -1.3467 -0.3535 20 8 5.4468 -0.1214 -0.1373 21 1 -0.4851 0.8401 -0.0004 22 1 2.0372 -3.5894 0.0100 23 1 3.1447 -5.7725 -0.1911 24 1 6.8667 -6.2884 -0.5321 25 1 6.9547 -3.8026 -0.4284 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022027329.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:49 Heat of formation + Delta-G solvation = -7.187870 kcal Electronic energy + Delta-G solvation = -16154.079991 eV Core-core repulsion = 13103.785149 eV Total energy + Delta-G solvation = -3050.294842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.052 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.40944 -40.37005 -39.15991 -37.83662 -35.96046 -34.37332 -32.35246 -31.95603 -28.47137 -26.84192 -25.27048 -23.68695 -21.82028 -21.07889 -20.22980 -18.36962 -18.22888 -17.54661 -17.20119 -16.91354 -16.75827 -15.97234 -15.94783 -15.57958 -15.07886 -14.72058 -14.49438 -13.70990 -13.41644 -13.10179 -12.82806 -12.26195 -12.12928 -11.62425 -11.44060 -11.22367 -11.15929 -10.66067 -10.30804 -9.77593 -9.74053 -6.34783 -1.34764 -0.27333 0.68398 1.08101 1.10820 1.16676 1.28487 1.50885 1.92817 2.06820 2.15430 2.79417 3.51260 3.70280 3.99945 4.14470 4.19389 4.43421 4.50357 4.74894 4.85293 4.96583 5.09878 5.31169 5.45811 5.62060 5.94799 6.62655 6.73124 6.80682 7.17519 Molecular weight = 237.05amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.008751 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.080929 B = 3198.765678 C = 4186.616009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.049 3.951 3 Si 0.945 3.055 4 H -0.255 1.255 5 H -0.221 1.221 6 H -0.262 1.262 7 C -0.230 4.230 8 H 0.149 0.851 9 O -0.033 6.033 10 C -0.019 4.019 11 C -0.176 4.176 12 C -0.039 4.039 13 C -0.261 4.261 14 C 0.406 3.594 15 O -0.512 6.512 16 C 0.045 3.955 17 C -0.069 4.069 18 N 0.025 4.975 19 O -0.425 6.425 20 O -0.390 6.390 21 H 0.345 0.655 22 H 0.158 0.842 23 H 0.149 0.851 24 H 0.146 0.854 25 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -3.844 0.126 5.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.185 4.185 3 Si 0.763 3.237 4 H -0.179 1.179 5 H -0.143 1.143 6 H -0.186 1.186 7 C -0.317 4.317 8 H 0.165 0.835 9 O 0.089 5.911 10 C -0.080 4.080 11 C -0.195 4.195 12 C -0.058 4.058 13 C -0.267 4.267 14 C 0.270 3.730 15 O -0.389 6.389 16 C 0.025 3.975 17 C -0.179 4.179 18 N 0.399 4.601 19 O -0.547 6.547 20 O -0.519 6.519 21 H 0.161 0.839 22 H 0.175 0.825 23 H 0.167 0.833 24 H 0.162 0.838 25 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.633 -4.017 0.156 6.134 hybrid contribution 0.332 1.301 0.040 1.343 sum -4.301 -2.716 0.196 5.091 Atomic orbital electron populations 1.68419 1.08182 1.36555 1.18018 1.27378 0.95912 1.01474 0.93694 0.85511 0.80223 0.75993 0.81973 1.17880 1.14267 1.18579 1.22831 0.81575 0.99492 1.27847 0.83474 1.80193 1.22673 1.33166 1.55024 1.18547 0.89503 0.83081 1.16908 1.20752 1.00572 0.89908 1.08305 1.21119 0.93727 0.96880 0.94112 1.20560 0.94761 0.94880 1.16469 1.24161 0.95978 0.84597 0.68307 1.90474 1.71110 1.38028 1.39281 1.20973 1.01132 0.88051 0.87312 1.19267 0.87590 0.83452 1.27557 1.49538 1.01683 1.03203 1.05686 1.95975 0.91978 1.95980 1.70721 1.96056 1.72891 1.14754 1.68203 0.83853 0.82481 0.83314 0.83814 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -22.81 13.88 23.22 0.32 -22.49 15 2 C 0.05 1.78 5.69 87.25 0.50 2.28 15 3 Si 0.95 33.12 28.83 68.60 1.98 35.10 15 4 H -0.25 -9.19 7.11 99.48 0.71 -8.48 15 5 H -0.22 -6.26 7.11 99.48 0.71 -5.56 15 6 H -0.26 -11.58 6.66 99.48 0.66 -10.92 15 7 C -0.23 -9.12 9.98 70.01 0.70 -8.42 15 8 H 0.15 5.27 5.12 -2.91 -0.01 5.26 15 9 O -0.03 -1.50 6.13 74.53 0.46 -1.05 15 10 C -0.02 -0.82 6.59 22.71 0.15 -0.67 15 11 C -0.18 -6.23 9.10 22.34 0.20 -6.03 15 12 C -0.04 -1.25 9.59 22.55 0.22 -1.04 15 13 C -0.26 -8.26 5.87 -20.13 -0.12 -8.38 15 14 C 0.41 10.50 11.45 70.11 0.80 11.31 15 15 O -0.51 -16.26 17.16 -3.03 -0.05 -16.31 15 16 C 0.04 1.65 9.31 22.55 0.21 1.86 15 17 C -0.07 -3.21 6.89 36.45 0.25 -2.96 15 18 N 0.03 1.42 4.98 -46.29 -0.23 1.19 15 19 O -0.42 -24.50 19.14 3.50 0.07 -24.43 15 20 O -0.39 -23.54 17.43 10.85 0.19 -23.35 15 21 H 0.34 9.41 8.26 -92.71 -0.77 8.64 15 22 H 0.16 4.81 5.67 -2.91 -0.02 4.79 15 23 H 0.15 4.17 7.64 -2.91 -0.02 4.15 15 24 H 0.15 2.42 8.06 -2.91 -0.02 2.40 15 25 H 0.16 5.27 7.57 -2.91 -0.02 5.25 15 Total: -1.00 -64.70 245.22 6.85 -57.84 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.21 Total: 5.53 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 2.91 Total: -12.04 kcal Atomic # 7 Polarization: -21.39 SS G_CDS: 0.09 Total: -21.30 kcal Atomic # 8 Polarization: -65.80 SS G_CDS: 0.66 Total: -65.14 kcal Atomic # 14 Polarization: 33.12 SS G_CDS: 1.98 Total: 35.10 kcal Total: -64.70 6.85 -57.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022027329.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.656 kcal (2) G-P(sol) polarization free energy of solvation -64.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds