Wall clock time and date at job start Sun Mar 29 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31398 * 1 3 3 Si 1.86800 * 119.99893 * 2 1 4 4 H 1.48509 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48496 * 109.47574 * 59.99977 * 3 2 1 7 7 C 1.39004 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99884 * 179.73031 * 7 2 1 9 9 N 1.36885 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00025 * 179.73055 * 9 7 2 11 11 O 1.21741 * 120.00078 * 359.97438 * 10 9 7 12 12 C 1.46456 * 119.99635 * 180.02562 * 10 9 7 13 13 C 1.35987 * 125.41956 * 179.97438 * 12 10 9 14 14 C 1.39142 * 113.98348 * 179.97438 * 13 12 10 15 15 C 1.34394 * 114.00362 * 0.02562 * 14 13 12 16 16 S 1.71483 * 111.09383 * 359.74007 * 15 14 13 17 17 C 1.52380 * 110.38014 * 179.97438 * 15 14 13 18 18 C 1.54166 * 104.90185 * 342.44938 * 17 15 14 19 19 C 1.52822 * 136.18635 * 180.02562 * 14 13 12 20 20 H 0.97009 * 119.99748 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99785 * 359.72820 * 9 7 2 22 22 H 1.08006 * 123.00826 * 359.97438 * 13 12 10 23 23 H 1.08995 * 110.35274 * 223.59111 * 17 15 14 24 24 H 1.08994 * 110.44022 * 101.35172 * 17 15 14 25 25 H 1.08994 * 110.95959 * 268.60137 * 18 17 15 26 26 H 1.09000 * 110.98648 * 144.87481 * 18 17 15 27 27 H 1.09001 * 110.33353 * 316.53567 * 19 14 13 28 28 H 1.09001 * 110.32805 * 78.65838 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0090 -1.2038 -0.0005 8 1 3.0890 -1.2038 -0.0049 9 7 1.3246 -2.3893 -0.0005 10 6 1.9984 -3.5565 -0.0065 11 8 3.2158 -3.5565 -0.0125 12 6 1.2661 -4.8248 -0.0071 13 6 1.8317 -6.0614 -0.0134 14 6 0.9108 -7.1045 -0.0119 15 6 -0.3714 -6.7018 -0.0050 16 16 -0.4808 -4.9906 0.0071 17 6 -1.3057 -7.9056 -0.0045 18 6 -0.4286 -9.0884 -0.4611 19 6 0.9741 -8.6314 -0.0160 20 1 -0.4850 0.8401 -0.0004 21 1 0.3545 -2.3893 0.0038 22 1 2.9000 -6.2198 -0.0190 23 1 -2.1259 -7.7492 -0.7050 24 1 -1.6935 -8.0860 0.9980 25 1 -0.4730 -9.2118 -1.5431 26 1 -0.7187 -10.0083 0.0465 27 1 1.7278 -8.9773 -0.7234 28 1 1.1951 -9.0040 0.9842 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714276.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:38 Heat of formation + Delta-G solvation = -12.872787 kcal Electronic energy + Delta-G solvation = -13885.379305 eV Core-core repulsion = 11413.423913 eV Total energy + Delta-G solvation = -2471.955393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19792 -38.02932 -34.34040 -33.67236 -31.39580 -28.38271 -27.86732 -25.21923 -22.71490 -21.46284 -19.55052 -18.47557 -17.52822 -17.21152 -15.64498 -15.27594 -14.75237 -14.19616 -13.87988 -13.69882 -12.94558 -12.84549 -12.32159 -12.08391 -11.71936 -11.59459 -11.42921 -11.20328 -11.15808 -10.72045 -10.49890 -10.39474 -10.27591 -9.68261 -8.63698 -8.18125 -8.10447 -7.90956 -6.59577 -3.92906 1.11893 1.88398 2.47547 2.82223 3.14650 3.20208 3.27854 4.05408 4.20980 4.56364 4.63245 4.92715 4.96003 5.22100 5.36677 5.56142 5.64122 5.71944 5.78820 5.89419 6.07215 6.11211 6.14572 6.51417 6.75349 6.83661 7.39570 7.90359 8.43598 9.00366 9.34441 9.88774 10.57106 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.058618 B = 0.005812 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.553110 B = 4816.625174 C = 5260.143619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.023 3.977 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.294 4.294 8 H 0.111 0.889 9 N -0.542 5.542 10 C 0.495 3.505 11 O -0.588 6.588 12 C -0.203 4.203 13 C -0.086 4.086 14 C -0.129 4.129 15 C -0.256 4.256 16 S 0.197 5.803 17 C -0.038 4.038 18 C -0.118 4.118 19 C -0.056 4.056 20 H 0.276 0.724 21 H 0.393 0.607 22 H 0.143 0.857 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -13.120 -0.115 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.424 4.424 8 H 0.129 0.871 9 N -0.175 5.175 10 C 0.282 3.718 11 O -0.475 6.475 12 C -0.324 4.324 13 C -0.118 4.118 14 C -0.142 4.142 15 C -0.376 4.376 16 S 0.466 5.534 17 C -0.077 4.077 18 C -0.157 4.157 19 C -0.095 4.095 20 H 0.086 0.914 21 H 0.227 0.773 22 H 0.161 0.839 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.486 -11.843 -0.099 13.052 hybrid contribution 0.941 -0.140 0.007 0.952 sum -4.545 -11.983 -0.092 12.817 Atomic orbital electron populations 1.69625 1.06162 1.28770 1.48052 1.25419 0.95737 1.00186 0.96689 0.85691 0.79793 0.80344 0.77937 1.18898 1.20443 1.20436 1.19910 0.93835 0.81923 1.46738 0.87144 1.41871 1.09229 1.04746 1.61703 1.16512 0.87087 0.81830 0.86351 1.90654 1.12564 1.86333 1.57932 1.24740 0.95931 0.98744 1.13000 1.20016 1.00604 0.89202 1.01932 1.20288 0.92267 0.96255 1.05396 1.25439 1.00294 0.99525 1.12314 1.82985 1.03731 0.96686 1.69992 1.20735 0.96043 0.89301 1.01627 1.22262 0.94661 0.97323 1.01406 1.20943 0.97442 0.89471 1.01617 0.91355 0.77339 0.83901 0.91089 0.90489 0.90902 0.90507 0.91050 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 13.05 55.50 0.72 -23.10 15 2 C 0.02 0.62 5.50 -17.45 -0.10 0.53 15 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 15 4 H -0.26 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.29 -8.27 9.68 -15.01 -0.15 -8.42 15 8 H 0.11 3.22 7.15 -52.48 -0.38 2.84 15 9 N -0.54 -14.46 5.27 -12.23 -0.06 -14.52 15 10 C 0.50 12.89 7.73 -12.95 -0.10 12.79 15 11 O -0.59 -17.05 16.40 5.15 0.08 -16.96 15 12 C -0.20 -4.37 6.41 -37.08 -0.24 -4.61 15 13 C -0.09 -1.65 10.00 -40.05 -0.40 -2.05 15 14 C -0.13 -2.07 6.49 -104.58 -0.68 -2.75 15 15 C -0.26 -3.99 7.10 -34.83 -0.25 -4.23 15 16 S 0.20 3.50 22.15 -107.50 -2.38 1.12 15 17 C -0.04 -0.43 6.81 -26.44 -0.18 -0.61 15 18 C -0.12 -1.15 7.11 -25.55 -0.18 -1.33 15 19 C -0.06 -0.66 6.81 -26.25 -0.18 -0.83 15 20 H 0.28 6.91 8.31 -40.82 -0.34 6.57 15 21 H 0.39 10.01 7.00 -40.82 -0.29 9.73 15 22 H 0.14 2.72 8.05 -52.48 -0.42 2.30 15 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 15 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -30.92 260.72 -7.93 -38.85 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -2.75 Total: 6.59 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -2.45 Total: -11.51 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.66 Total: -37.62 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.08 Total: -16.96 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.38 Total: 1.12 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.92 -7.93 -38.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714276.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.982 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds